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  5. Seita.5G402200.1

Seita.5G402200.1


Description : Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein


Gene families : OG_01_0008819 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008819_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.5G402200.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_127


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR019734 TPR_repeat SMART 128 161
IPR019734 TPR_repeat SMART 54 87
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 54 604
IPR019734 TPR_repeat ProSiteProfiles 54 87
IPR011990 TPR-like_helical_dom_sf Gene3D 50 176
IPR044517 PHOX1-4 PANTHER 1 761
IPR000270 PB1_dom Pfam 298 387
IPR000270 PB1_dom ProSiteProfiles 296 390
IPR000270 PB1_dom SMART 296 390
IPR019734 TPR_repeat SMART 128 161
IPR019734 TPR_repeat SMART 54 87
IPR000270 PB1_dom ProSiteProfiles 296 390
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 54 604
IPR044517 PHOX1-4 PANTHER 1 762
IPR000270 PB1_dom Pfam 296 388
IPR000270 PB1_dom SMART 296 390
IPR011990 TPR-like_helical_dom_sf Gene3D 50 176
IPR019734 TPR_repeat ProSiteProfiles 54 87

No CAZYmes available for this sequence

No external refs found!