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  5. Seita.5G433800.1

Seita.5G433800.1


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0004559 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004559_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.5G433800.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_217


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006364 rRNA processing ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR019775 WD40_repeat_CS ProSitePatterns 420 434
IPR044285 PWP1 PANTHER 8 492
IPR001680 WD40_rpt ProSiteProfiles 400 442
IPR019775 WD40_repeat_CS ProSitePatterns 285 299
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 89 345
IPR001680 WD40_rpt ProSiteProfiles 265 307
IPR001680 WD40_rpt Pfam 395 433
IPR001680 WD40_rpt Pfam 441 478
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 346 488
IPR020472 G-protein_beta_WD-40_rep PRINTS 219 233
IPR020472 G-protein_beta_WD-40_rep PRINTS 285 299
IPR020472 G-protein_beta_WD-40_rep PRINTS 420 434
IPR024977 Apc4-like_WD40_dom Pfam 265 321
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 200 478
IPR001680 WD40_rpt SMART 256 298
IPR001680 WD40_rpt SMART 301 341
IPR001680 WD40_rpt SMART 182 232
IPR001680 WD40_rpt SMART 393 433
IPR001680 WD40_rpt SMART 438 478
IPR001680 WD40_rpt SMART 345 384
IPR001680 WD40_rpt ProSiteProfiles 265 307
IPR001680 WD40_rpt Pfam 396 433
IPR001680 WD40_rpt Pfam 302 337
IPR001680 WD40_rpt Pfam 267 298
IPR001680 WD40_rpt Pfam 451 478
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 346 488
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 89 345
IPR019775 WD40_repeat_CS ProSitePatterns 285 299
IPR044285 PWP1 PANTHER 8 491
IPR019775 WD40_repeat_CS ProSitePatterns 420 434
IPR001680 WD40_rpt ProSiteProfiles 400 442
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 200 478
IPR001680 WD40_rpt SMART 256 298
IPR001680 WD40_rpt SMART 301 341
IPR001680 WD40_rpt SMART 182 232
IPR001680 WD40_rpt SMART 393 433
IPR001680 WD40_rpt SMART 438 478
IPR001680 WD40_rpt SMART 345 384
IPR020472 G-protein_beta_WD-40_rep PRINTS 219 233
IPR020472 G-protein_beta_WD-40_rep PRINTS 285 299
IPR020472 G-protein_beta_WD-40_rep PRINTS 420 434

No CAZYmes available for this sequence

No external refs found!