Seita.5G450200.1

Description : Restriction endonuclease, type II-like superfamily protein

Gene families : OG_01_0006296 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006296_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.5G450200.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_7

Type	GO Term	Name	Evidence	Source
BP	GO:0000737	obsolete DNA catabolic process, endonucleolytic	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	ISM	GOs from InterProScan
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004520	DNA endonuclease activity	None	Extended
MF	GO:0004536	DNA nuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006302	double-strand break repair	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008821	crossover junction DNA endonuclease activity	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016889	DNA endonuclease activity, producing 3'-phosphomonoesters	None	Extended
MF	GO:0016894	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036388	WH-like_DNA-bd_sf	Gene3D	106	222
IPR006166	ERCC4_domain	SMART	352	448
IPR011335	Restrct_endonuc-II-like	SUPERFAMILY	349	490
IPR047416	XPF_nuclease_Mus81	CDD	349	492
IPR033309	Mus81	PANTHER	19	597
IPR047417	WH_MUS81	CDD	114	215
IPR047417	WH_MUS81	Pfam	116	207
IPR042530	EME1/EME2_C	Gene3D	526	601
IPR006166	ERCC4_domain	Pfam	356	482
IPR011335	Restrct_endonuc-II-like	SUPERFAMILY	349	490
IPR033309	Mus81	PANTHER	17	598
IPR036388	WH-like_DNA-bd_sf	Gene3D	106	222
IPR006166	ERCC4_domain	Pfam	356	481
IPR006166	ERCC4_domain	SMART	352	448
IPR042530	EME1/EME2_C	Gene3D	526	601

No CAZYmes available for this sequence

External Links

No external refs found!

Seita.5G450200.1

Expression Profile

Co-expression Networks

Functional Annotation