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  5. Seita.5G455200.1

Seita.5G455200.1


Description : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain


Gene families : OG_01_0011677 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011677_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.5G455200.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_60


Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000408 Reg_chr_condens ProSiteProfiles 500 551
IPR000408 Reg_chr_condens ProSitePatterns 474 484
IPR000408 Reg_chr_condens ProSiteProfiles 552 603
IPR000306 Znf_FYVE Pfam 656 722
IPR001849 PH_domain Pfam 21 127
IPR009091 RCC1/BLIP-II Gene3D 391 657
IPR000408 Reg_chr_condens ProSitePatterns 315 325
IPR027988 BRX_N Pfam 912 946
IPR000408 Reg_chr_condens PRINTS 438 452
IPR000408 Reg_chr_condens PRINTS 541 559
IPR000408 Reg_chr_condens PRINTS 331 347
IPR000408 Reg_chr_condens PRINTS 381 397
IPR000408 Reg_chr_condens PRINTS 422 438
IPR000408 Reg_chr_condens PRINTS 599 620
IPR000408 Reg_chr_condens PRINTS 312 325
IPR011011 Znf_FYVE_PHD SUPERFAMILY 656 726
IPR000408 Reg_chr_condens ProSiteProfiles 329 380
IPR000408 Reg_chr_condens ProSiteProfiles 267 328
IPR000408 Reg_chr_condens ProSitePatterns 422 432
IPR011993 PH-like_dom_sf Gene3D 19 136
IPR009091 RCC1/BLIP-II Gene3D 214 390
IPR013591 Brevis_radix_dom ProSiteProfiles 1019 1074
IPR013083 Znf_RING/FYVE/PHD Gene3D 658 733
IPR000306 Znf_FYVE SMART 654 723
IPR009091 RCC1/BLIP-II SUPERFAMILY 266 657
IPR017455 Znf_FYVE-rel ProSiteProfiles 660 722
IPR000408 Reg_chr_condens ProSiteProfiles 436 487
IPR013591 Brevis_radix_dom Pfam 1018 1073
IPR000408 Reg_chr_condens ProSiteProfiles 381 435
IPR000408 Reg_chr_condens Pfam 436 484
IPR000408 Reg_chr_condens Pfam 380 432
IPR000408 Reg_chr_condens Pfam 551 600
IPR000408 Reg_chr_condens Pfam 499 548
IPR000408 Reg_chr_condens Pfam 605 652
IPR000408 Reg_chr_condens Pfam 267 325
IPR000408 Reg_chr_condens Pfam 328 377
IPR000408 Reg_chr_condens ProSiteProfiles 604 655
IPR013591 Brevis_radix_dom Pfam 1018 1073
IPR009091 RCC1/BLIP-II Gene3D 214 390
IPR000408 Reg_chr_condens PRINTS 438 452
IPR000408 Reg_chr_condens PRINTS 541 559
IPR000408 Reg_chr_condens PRINTS 331 347
IPR000408 Reg_chr_condens PRINTS 381 397
IPR000408 Reg_chr_condens PRINTS 422 438
IPR000408 Reg_chr_condens PRINTS 599 620
IPR000408 Reg_chr_condens PRINTS 312 325
IPR011993 PH-like_dom_sf Gene3D 19 136
IPR000408 Reg_chr_condens ProSiteProfiles 329 380
IPR000408 Reg_chr_condens ProSitePatterns 422 432
IPR000408 Reg_chr_condens ProSitePatterns 474 484
IPR009091 RCC1/BLIP-II SUPERFAMILY 266 657
IPR000408 Reg_chr_condens ProSiteProfiles 381 435
IPR000408 Reg_chr_condens Pfam 551 600
IPR000408 Reg_chr_condens Pfam 499 548
IPR000408 Reg_chr_condens Pfam 436 484
IPR000408 Reg_chr_condens Pfam 329 377
IPR000408 Reg_chr_condens Pfam 380 431
IPR000408 Reg_chr_condens Pfam 605 652
IPR000408 Reg_chr_condens Pfam 267 324
IPR013083 Znf_RING/FYVE/PHD Gene3D 658 733
IPR017455 Znf_FYVE-rel ProSiteProfiles 660 722
IPR009091 RCC1/BLIP-II Gene3D 391 657
IPR000408 Reg_chr_condens ProSiteProfiles 552 603
IPR000408 Reg_chr_condens ProSiteProfiles 267 328
IPR000408 Reg_chr_condens ProSiteProfiles 436 487
IPR000408 Reg_chr_condens ProSiteProfiles 604 655
IPR027988 BRX_N Pfam 912 946
IPR011011 Znf_FYVE_PHD SUPERFAMILY 656 726
IPR000306 Znf_FYVE SMART 654 723
IPR000306 Znf_FYVE Pfam 656 722
IPR000408 Reg_chr_condens ProSiteProfiles 500 551
IPR000408 Reg_chr_condens ProSitePatterns 315 325
IPR013591 Brevis_radix_dom ProSiteProfiles 1019 1074

No CAZYmes available for this sequence

No external refs found!