1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.6G011500.1

Seita.6G011500.1


Description : succinate dehydrogenase 1-1


Gene families : OG_01_0004517 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004517_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.6G011500.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_205


Type GO Term Name Evidence Source
BP GO:0006099 tricarboxylic acid cycle ISM GOs from InterProScan
MF GO:0016491 oxidoreductase activity ISM GOs from InterProScan
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors ISM GOs from InterProScan
BP GO:0022900 electron transport chain ISM GOs from InterProScan
MF GO:0050660 flavin adenine dinucleotide binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR030664 SdhA/FrdA/AprA PANTHER 14 619
IPR014006 Succ_Dhase_FrdA_Gneg NCBIfam 36 619
IPR036188 FAD/NAD-bd_sf SUPERFAMILY 24 454
IPR027477 Succ_DH/fumarate_Rdtase_cat_sf Gene3D 274 377
IPR036188 FAD/NAD-bd_sf Gene3D 36 443
IPR003953 FAD-binding_2 Pfam 36 432
IPR037099 Fum_R/Succ_DH_flav-like_C_sf SUPERFAMILY 478 619
IPR027477 Succ_DH/fumarate_Rdtase_cat_sf SUPERFAMILY 264 382
IPR003952 FRD_SDH_FAD_BS ProSitePatterns 70 79
IPR011281 Succ_DH_flav_su_fwd NCBIfam 33 619
IPR015939 Fum_Rdtase/Succ_DH_flav-like_C Pfam 487 619
IPR003952 FRD_SDH_FAD_BS ProSitePatterns 70 79
IPR027477 Succ_DH/fumarate_Rdtase_cat_sf SUPERFAMILY 264 382
IPR014006 Succ_Dhase_FrdA_Gneg TIGRFAM 36 619
IPR015939 Fum_Rdtase/Succ_DH_flav-like_C Pfam 488 619
IPR036188 FAD/NAD-bd_sf SUPERFAMILY 24 454
IPR003953 FAD-binding_2 Pfam 36 432
IPR030664 SdhA/FrdA/AprA PANTHER 11 619
IPR036188 FAD/NAD-bd_sf Gene3D 36 443
IPR011281 Succ_DH_flav_su_fwd TIGRFAM 33 619
IPR037099 Fum_R/Succ_DH_flav-like_C_sf SUPERFAMILY 478 619
IPR027477 Succ_DH/fumarate_Rdtase_cat_sf Gene3D 274 377

No CAZYmes available for this sequence

No external refs found!