Seita.6G027800.1

Description : tetratricopeptide repeat (TPR)-containing protein

Gene families : OG_01_0000948 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000948_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.6G027800.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_64

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	None	Extended
BP	GO:0006383	transcription by RNA polymerase III	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR019734	TPR_repeat	ProSiteProfiles	174	207
IPR019734	TPR_repeat	Pfam	822	852
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	430	789
IPR019734	TPR_repeat	ProSiteProfiles	242	275
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	358	484
IPR011990	TPR-like_helical_dom_sf	Gene3D	579	909
IPR011990	TPR-like_helical_dom_sf	Gene3D	313	498
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	750	904
IPR019734	TPR_repeat	ProSiteProfiles	430	463
IPR039340	Tfc4/TFIIIC-102/Sfc4	PANTHER	6	910
IPR019734	TPR_repeat	SMART	174	207
IPR019734	TPR_repeat	SMART	430	463
IPR019734	TPR_repeat	SMART	821	854
IPR019734	TPR_repeat	SMART	140	173
IPR019734	TPR_repeat	SMART	208	241
IPR019734	TPR_repeat	SMART	242	275
IPR011990	TPR-like_helical_dom_sf	Gene3D	128	312
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	147	307
IPR039340	Tfc4/TFIIIC-102/Sfc4	PANTHER	23	910
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	750	904
IPR019734	TPR_repeat	ProSiteProfiles	242	275
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	358	484
IPR011990	TPR-like_helical_dom_sf	Gene3D	128	312
IPR019734	TPR_repeat	ProSiteProfiles	174	207
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	147	307
IPR019734	TPR_repeat	Pfam	822	853
IPR019734	TPR_repeat	Pfam	432	458
IPR019734	TPR_repeat	SMART	430	463
IPR019734	TPR_repeat	SMART	174	207
IPR019734	TPR_repeat	SMART	821	854
IPR019734	TPR_repeat	SMART	140	173
IPR019734	TPR_repeat	SMART	208	241
IPR019734	TPR_repeat	SMART	242	275
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	430	789
IPR019734	TPR_repeat	ProSiteProfiles	430	463
IPR011990	TPR-like_helical_dom_sf	Gene3D	579	909
IPR011990	TPR-like_helical_dom_sf	Gene3D	313	498

No CAZYmes available for this sequence

External Links

No external refs found!

Seita.6G027800.1

Expression Profile

Co-expression Networks

Functional Annotation