Seita.6G059100.1

Description : DNA topoisomerase I alpha

Gene families : OG_01_0000768 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000768_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.6G059100.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_81

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	None	Extended
MF	GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011010	DNA_brk_join_enz	SUPERFAMILY	574	900
IPR036202	TopoI_DNA-bd_euk_N_sf	SUPERFAMILY	358	573
IPR014711	TopoI_cat_a-hlx-sub_euk	Gene3D	574	722
IPR013030	DNA_topo_DNA_db_N_dom2	Gene3D	360	571
IPR001631	TopoI	PRINTS	639	653
IPR001631	TopoI	PRINTS	856	867
IPR001631	TopoI	PRINTS	500	509
IPR001631	TopoI	PRINTS	616	635
IPR001631	TopoI	PRINTS	661	677
IPR001631	TopoI	PRINTS	719	733
IPR013499	TopoI_euk	SMART	500	876
IPR025834	TopoI_C_dom	Pfam	835	903
IPR013500	TopoI_cat_euk	Pfam	574	798
IPR014727	TopoI_cat_a/b-sub_euk	Gene3D	723	903
IPR018521	TopoI_AS	ProSitePatterns	849	867
IPR013500	TopoI_cat_euk	CDD	580	773
IPR013034	DNA_topo_DNA_db_N_dom1	Gene3D	376	461
IPR008336	TopoI_DNA-bd_euk	Pfam	359	571
IPR011010	DNA_brk_join_enz	SUPERFAMILY	574	900
IPR036202	TopoI_DNA-bd_euk_N_sf	SUPERFAMILY	358	573
IPR013499	TopoI_euk	SMART	500	876
IPR008336	TopoI_DNA-bd_euk	Pfam	360	571
IPR013034	DNA_topo_DNA_db_N_dom1	Gene3D	376	461
IPR001631	TopoI	PRINTS	639	653
IPR001631	TopoI	PRINTS	856	867
IPR001631	TopoI	PRINTS	500	509
IPR001631	TopoI	PRINTS	616	635
IPR001631	TopoI	PRINTS	661	677
IPR001631	TopoI	PRINTS	719	733
IPR018521	TopoI_AS	ProSitePatterns	849	867
IPR013500	TopoI_cat_euk	Pfam	574	798
IPR014727	TopoI_cat_a/b-sub_euk	Gene3D	723	903
IPR013500	TopoI_cat_euk	CDD	580	773
IPR013030	DNA_topo_DNA_db_N_dom2	Gene3D	360	571
IPR025834	TopoI_C_dom	Pfam	835	903
IPR014711	TopoI_cat_a-hlx-sub_euk	Gene3D	574	722

No CAZYmes available for this sequence

External Links

No external refs found!

Seita.6G059100.1

Expression Profile

Co-expression Networks

Functional Annotation