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  5. Seita.6G069400.1

Seita.6G069400.1


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG_01_0008767 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008767_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.6G069400.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_82


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 381 427
IPR002885 Pentatricopeptide_rpt Pfam 280 326
IPR011990 TPR-like_helical_dom_sf Gene3D 204 334
IPR032867 DYW_dom Pfam 596 688
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 350 380
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 315 349
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 137 171
IPR011990 TPR-like_helical_dom_sf Gene3D 68 203
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 280 314
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 381 415
IPR046848 E_motif Pfam 498 559
IPR045215 PPR_prot_At1g15510 PANTHER 314 581
IPR011990 TPR-like_helical_dom_sf Gene3D 335 449
IPR002885 Pentatricopeptide_rpt Pfam 140 168
IPR002885 Pentatricopeptide_rpt Pfam 170 198
IPR002885 Pentatricopeptide_rpt Pfam 253 275
IPR002885 Pentatricopeptide_rpt NCBIfam 383 416
IPR002885 Pentatricopeptide_rpt NCBIfam 170 198
IPR002885 Pentatricopeptide_rpt NCBIfam 253 274
IPR002885 Pentatricopeptide_rpt NCBIfam 355 381
IPR002885 Pentatricopeptide_rpt NCBIfam 282 312
IPR002885 Pentatricopeptide_rpt Pfam 170 198
IPR002885 Pentatricopeptide_rpt Pfam 253 275
IPR002885 Pentatricopeptide_rpt Pfam 140 168
IPR002885 Pentatricopeptide_rpt Pfam 381 427
IPR002885 Pentatricopeptide_rpt Pfam 280 325
IPR011990 TPR-like_helical_dom_sf Gene3D 204 334
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 280 314
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 315 349
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 350 380
IPR011990 TPR-like_helical_dom_sf Gene3D 335 449
IPR032867 DYW_dom Pfam 555 678
IPR002885 Pentatricopeptide_rpt TIGRFAM 253 274
IPR002885 Pentatricopeptide_rpt TIGRFAM 355 381
IPR002885 Pentatricopeptide_rpt TIGRFAM 170 198
IPR002885 Pentatricopeptide_rpt TIGRFAM 383 416
IPR002885 Pentatricopeptide_rpt TIGRFAM 282 312
IPR011990 TPR-like_helical_dom_sf Gene3D 68 203
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 137 171
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 381 415

No CAZYmes available for this sequence

No external refs found!