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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0012259 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012259_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.6G214400.1 | No neighbors in network |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.6G214400.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_111 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 235 | 269 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 105 | 190 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 287 | 383 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 191 | 286 |
| IPR032867 | DYW_dom | Pfam | 507 | 631 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 136 | 171 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 334 | 368 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 209 | 232 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 409 | 432 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 384 | 524 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 417 | 517 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 303 | 333 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 333 | 379 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 135 | 183 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 235 | 281 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 209 | 235 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 237 | 270 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 306 | 334 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 409 | 433 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 110 | 138 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 336 | 369 |
No CAZYmes available for this sequence
| No external refs found! |