Seita.6G098800.1

Description : ABC-2 type transporter family protein

Gene families : OG_01_0017260 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0017260_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.6G098800.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_146

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140359	ABC-type transporter activity	ISM	GOs from InterProScan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR003593	AAA+_ATPase	SMART	98	288
IPR027417	P-loop_NTPase	Gene3D	62	292
IPR017871	ABC_transporter-like_CS	ProSitePatterns	213	227
IPR027417	P-loop_NTPase	SUPERFAMILY	81	289
IPR003439	ABC_transporter-like_ATP-bd	Pfam	89	241
IPR003439	ABC_transporter-like_ATP-bd	ProSiteProfiles	62	302
IPR043926	ABCG_dom	Pfam	259	315
IPR013525	ABC2_TM	Pfam	514	720
IPR003439	ABC_transporter-like_ATP-bd	ProSiteProfiles	62	302
IPR027417	P-loop_NTPase	Gene3D	62	292
IPR043926	ABCG_dom	Pfam	259	315
IPR013525	ABC2_TM	Pfam	514	720
IPR027417	P-loop_NTPase	SUPERFAMILY	81	289
IPR003593	AAA+_ATPase	SMART	98	288
IPR017871	ABC_transporter-like_CS	ProSitePatterns	213	227
IPR003439	ABC_transporter-like_ATP-bd	Pfam	89	241

No CAZYmes available for this sequence

External Links

No external refs found!