Seita.6G158400.1

Description : polypyrimidine tract-binding protein 1

Gene families : OG_01_0011794 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011794_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.6G158400.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_262

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	39	152
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	172	276
IPR034794	PTBPH1/PTBPH2_RRM3	CDD	173	269
IPR021790	PTBP1-like_RRM2	Pfam	173	251
IPR035979	RBD_domain_sf	SUPERFAMILY	179	273
IPR035979	RBD_domain_sf	SUPERFAMILY	52	147
IPR034794	PTBPH1/PTBPH2_RRM3	CDD	173	269
IPR021790	PTBP1-like_RRM2	Pfam	173	251
IPR035979	RBD_domain_sf	SUPERFAMILY	179	273
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	39	152
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	172	276
IPR035979	RBD_domain_sf	SUPERFAMILY	52	147

No CAZYmes available for this sequence

External Links

No external refs found!