- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0003585 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003585_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.6G220900.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.6G220900.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_144 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_94 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 378 | 412 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 580 | 614 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 65 | 232 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 799 | 968 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 529 | 640 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 233 | 335 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 781 | 815 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 816 | 846 |
| IPR032867 | DYW_dom | Pfam | 955 | 1078 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 336 | 432 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 641 | 738 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 435 | 528 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 267 | 301 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 479 | 513 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 681 | 711 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 451 | 476 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 169 | 198 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 481 | 506 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 582 | 612 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 655 | 680 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 683 | 709 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 241 | 266 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 780 | 829 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 378 | 423 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 267 | 314 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 236 | 266 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 166 | 200 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 166 | 939 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 169 | 202 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 269 | 302 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 783 | 817 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 582 | 616 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 451 | 480 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 241 | 267 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 381 | 414 |
No CAZYmes available for this sequence
| No external refs found! |