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  5. Seita.6G198700.1

Seita.6G198700.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0008433 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008433_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.6G198700.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_205


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 229 277
IPR002885 Pentatricopeptide_rpt Pfam 336 381
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 369 403
IPR011990 TPR-like_helical_dom_sf Gene3D 137 285
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 264 298
IPR011990 TPR-like_helical_dom_sf Gene3D 286 455
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 229 263
IPR002885 Pentatricopeptide_rpt Pfam 197 219
IPR002885 Pentatricopeptide_rpt Pfam 165 190
IPR002885 Pentatricopeptide_rpt NCBIfam 336 370
IPR002885 Pentatricopeptide_rpt NCBIfam 231 265
IPR002885 Pentatricopeptide_rpt NCBIfam 165 192
IPR002885 Pentatricopeptide_rpt NCBIfam 372 404
IPR002885 Pentatricopeptide_rpt NCBIfam 266 299
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 334 368
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 334 368
IPR002885 Pentatricopeptide_rpt TIGRFAM 372 404
IPR002885 Pentatricopeptide_rpt TIGRFAM 165 192
IPR002885 Pentatricopeptide_rpt TIGRFAM 266 299
IPR002885 Pentatricopeptide_rpt TIGRFAM 336 370
IPR002885 Pentatricopeptide_rpt TIGRFAM 231 265
IPR011990 TPR-like_helical_dom_sf Gene3D 137 285
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 229 263
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 369 403
IPR002885 Pentatricopeptide_rpt Pfam 333 377
IPR002885 Pentatricopeptide_rpt Pfam 230 276
IPR011990 TPR-like_helical_dom_sf Gene3D 286 455
IPR002885 Pentatricopeptide_rpt Pfam 197 219
IPR002885 Pentatricopeptide_rpt Pfam 165 190
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 264 298

No CAZYmes available for this sequence

No external refs found!