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  5. Seita.6G231200.1

Seita.6G231200.1


Description : AMP-dependent synthetase and ligase family protein


Gene families : OG_01_0020030 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0020030_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.6G231200.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_140


Type GO Term Name Evidence Source
MF GO:0004096 catalase activity ISM GOs from InterProScan
BP GO:0006979 response to oxidative stress ISM GOs from InterProScan
BP GO:0008610 lipid biosynthetic process ISM GOs from InterProScan
MF GO:0020037 heme binding ISM GOs from InterProScan
MF GO:0031177 phosphopantetheine binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036736 ACP-like_sf SUPERFAMILY 1218 1315
IPR006162 Ppantetheine_attach_site ProSitePatterns 1249 1264
IPR036188 FAD/NAD-bd_sf Gene3D 23 441
IPR020845 AMP-binding_CS ProSitePatterns 683 694
IPR000873 AMP-dep_Synth/Lig_com Pfam 521 911
IPR036736 ACP-like_sf Gene3D 1119 1201
IPR009081 PP-bd_ACP ProSiteProfiles 1217 1294
IPR036188 FAD/NAD-bd_sf SUPERFAMILY 22 265
IPR042099 ANL_N_sf Gene3D 479 953
IPR020835 Catalase_sf SUPERFAMILY 1809 2146
IPR009081 PP-bd_ACP ProSiteProfiles 1127 1201
IPR009081 PP-bd_ACP Pfam 1132 1197
IPR009081 PP-bd_ACP Pfam 1225 1290
IPR011614 Catalase_core SMART 1810 2182
IPR018028 Catalase ProSiteProfiles 1742 2410
IPR036736 ACP-like_sf Gene3D 1215 1323
IPR011004 Trimer_LpxA-like_sf SUPERFAMILY 1448 1529
IPR045851 AMP-bd_C_sf Gene3D 954 1087
IPR040097 FAAL/FAAC CDD 503 1073
IPR036736 ACP-like_sf SUPERFAMILY 1128 1210
IPR020806 PKS_PP-bd SMART 1223 1294
IPR020806 PKS_PP-bd SMART 1130 1201
IPR006162 Ppantetheine_attach_site ProSitePatterns 1156 1171
IPR011004 Trimer_LpxA-like_sf SUPERFAMILY 1695 1797
IPR011004 Trimer_LpxA-like_sf SUPERFAMILY 2314 2397
IPR036736 ACP-like_sf SUPERFAMILY 1218 1315
IPR020806 PKS_PP-bd SMART 1223 1294
IPR020806 PKS_PP-bd SMART 1130 1201
IPR036188 FAD/NAD-bd_sf Gene3D 23 441
IPR006162 Ppantetheine_attach_site ProSitePatterns 1156 1171
IPR009081 PP-bd_ACP ProSiteProfiles 1127 1201
IPR001451 Hexapep Pfam 1502 1530
IPR011004 Trimer_LpxA-like_sf SUPERFAMILY 2314 2397
IPR042099 ANL_N_sf Gene3D 479 953
IPR011614 Catalase_core SMART 1810 2182
IPR006162 Ppantetheine_attach_site ProSitePatterns 1249 1264
IPR011614 Catalase_core Pfam 1839 1936
IPR036736 ACP-like_sf SUPERFAMILY 1128 1210
IPR036736 ACP-like_sf Gene3D 1119 1201
IPR011004 Trimer_LpxA-like_sf SUPERFAMILY 1695 1797
IPR020845 AMP-binding_CS ProSitePatterns 683 694
IPR009081 PP-bd_ACP ProSiteProfiles 1217 1294
IPR040097 FAAL/FAAC CDD 503 1073
IPR020835 Catalase_sf SUPERFAMILY 1809 2146
IPR045851 AMP-bd_C_sf Gene3D 954 1087
IPR011004 Trimer_LpxA-like_sf SUPERFAMILY 1448 1529
IPR009081 PP-bd_ACP Pfam 1225 1290
IPR009081 PP-bd_ACP Pfam 1132 1197
IPR000873 AMP-dep_Synth/Lig_com Pfam 509 959
IPR018028 Catalase ProSiteProfiles 1742 2410
IPR036188 FAD/NAD-bd_sf SUPERFAMILY 22 265
IPR036736 ACP-like_sf Gene3D 1215 1323

No CAZYmes available for this sequence

No external refs found!