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  5. Seita.7G029100.1

Seita.7G029100.1


Description : ATP binding cassette subfamily B19


Gene families : OG_01_0030532 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0030532_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.7G029100.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_40


Type GO Term Name Evidence Source
MF GO:0005524 ATP binding ISM GOs from InterProScan
BP GO:0055085 transmembrane transport ISM GOs from InterProScan
MF GO:0140359 ABC-type transporter activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR003439 ABC_transporter-like_ATP-bd Pfam 603 751
IPR003439 ABC_transporter-like_ATP-bd Pfam 1242 1390
IPR036640 ABC1_TM_sf SUPERFAMILY 250 566
IPR011527 ABC1_TM_dom Pfam 901 1171
IPR011527 ABC1_TM_dom Pfam 263 533
IPR036640 ABC1_TM_sf Gene3D 250 838
IPR011527 ABC1_TM_dom ProSiteProfiles 263 549
IPR017871 ABC_transporter-like_CS ProSitePatterns 1363 1377
IPR003439 ABC_transporter-like_ATP-bd ProSiteProfiles 584 820
IPR036640 ABC1_TM_sf SUPERFAMILY 890 1208
IPR027417 P-loop_NTPase SUPERFAMILY 1221 1461
IPR027417 P-loop_NTPase Gene3D 1213 1464
IPR027417 P-loop_NTPase Gene3D 852 870
IPR027417 P-loop_NTPase Gene3D 574 822
IPR003593 AAA+_ATPase SMART 611 797
IPR003593 AAA+_ATPase SMART 1251 1437
IPR027417 P-loop_NTPase SUPERFAMILY 575 819
IPR036640 ABC1_TM_sf Gene3D 1190 1465
IPR036640 ABC1_TM_sf Gene3D 871 1189
IPR003439 ABC_transporter-like_ATP-bd ProSiteProfiles 1224 1460
IPR011527 ABC1_TM_dom ProSiteProfiles 902 1188
IPR017871 ABC_transporter-like_CS ProSitePatterns 723 737
IPR039421 Type_1_exporter PANTHER 855 1462
IPR003439 ABC_transporter-like_ATP-bd ProSiteProfiles 1224 1460
IPR017871 ABC_transporter-like_CS ProSitePatterns 1363 1377
IPR003439 ABC_transporter-like_ATP-bd ProSiteProfiles 584 820
IPR036640 ABC1_TM_sf SUPERFAMILY 250 566
IPR027417 P-loop_NTPase Gene3D 1213 1464
IPR027417 P-loop_NTPase Gene3D 852 870
IPR027417 P-loop_NTPase Gene3D 574 822
IPR036640 ABC1_TM_sf Gene3D 1190 1465
IPR011527 ABC1_TM_dom Pfam 901 1171
IPR011527 ABC1_TM_dom Pfam 263 533
IPR003593 AAA+_ATPase SMART 611 797
IPR003593 AAA+_ATPase SMART 1251 1437
IPR003439 ABC_transporter-like_ATP-bd Pfam 603 751
IPR011527 ABC1_TM_dom ProSiteProfiles 902 1188
IPR017871 ABC_transporter-like_CS ProSitePatterns 723 737
IPR011527 ABC1_TM_dom ProSiteProfiles 263 549
IPR027417 P-loop_NTPase SUPERFAMILY 575 819
IPR027417 P-loop_NTPase SUPERFAMILY 1221 1461
IPR036640 ABC1_TM_sf SUPERFAMILY 890 1208
IPR003439 ABC_transporter-like_ATP-bd Pfam 1242 1390
IPR036640 ABC1_TM_sf Gene3D 250 838
IPR036640 ABC1_TM_sf Gene3D 871 1189

No CAZYmes available for this sequence

No external refs found!