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  5. Seita.7G058000.1

Seita.7G058000.1


Description : rna processing factor 2


Gene families : OG_01_0003152 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003152_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.7G058000.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_128


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 324 358
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 254 288
IPR011990 TPR-like_helical_dom_sf Gene3D 518 697
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 429 463
IPR011990 TPR-like_helical_dom_sf Gene3D 10 171
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 146 181
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 219 253
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 111 145
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 289 323
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 569 603
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 394 428
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 359 393
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 534 568
IPR011990 TPR-like_helical_dom_sf Gene3D 248 317
IPR011990 TPR-like_helical_dom_sf Gene3D 318 389
IPR011990 TPR-like_helical_dom_sf Gene3D 172 247
IPR002885 Pentatricopeptide_rpt NCBIfam 362 394
IPR002885 Pentatricopeptide_rpt NCBIfam 326 360
IPR002885 Pentatricopeptide_rpt NCBIfam 113 142
IPR002885 Pentatricopeptide_rpt NCBIfam 466 499
IPR002885 Pentatricopeptide_rpt NCBIfam 572 604
IPR002885 Pentatricopeptide_rpt NCBIfam 432 465
IPR002885 Pentatricopeptide_rpt NCBIfam 606 640
IPR002885 Pentatricopeptide_rpt NCBIfam 221 255
IPR002885 Pentatricopeptide_rpt NCBIfam 502 534
IPR002885 Pentatricopeptide_rpt NCBIfam 257 289
IPR002885 Pentatricopeptide_rpt NCBIfam 291 325
IPR002885 Pentatricopeptide_rpt NCBIfam 148 183
IPR002885 Pentatricopeptide_rpt NCBIfam 537 569
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 604 638
IPR002885 Pentatricopeptide_rpt Pfam 389 419
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 499 533
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 464 498
IPR002885 Pentatricopeptide_rpt Pfam 603 640
IPR002885 Pentatricopeptide_rpt Pfam 288 337
IPR002885 Pentatricopeptide_rpt Pfam 463 511
IPR002885 Pentatricopeptide_rpt Pfam 148 194
IPR002885 Pentatricopeptide_rpt Pfam 218 267
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 182 216
IPR002885 Pentatricopeptide_rpt Pfam 537 562
IPR002885 Pentatricopeptide_rpt Pfam 571 596
IPR002885 Pentatricopeptide_rpt Pfam 114 140
IPR002885 Pentatricopeptide_rpt Pfam 432 461
IPR011990 TPR-like_helical_dom_sf Gene3D 401 517
IPR011990 TPR-like_helical_dom_sf Gene3D 248 317
IPR011990 TPR-like_helical_dom_sf Gene3D 318 389
IPR011990 TPR-like_helical_dom_sf Gene3D 172 247
IPR002885 Pentatricopeptide_rpt TIGRFAM 291 325
IPR002885 Pentatricopeptide_rpt TIGRFAM 432 465
IPR002885 Pentatricopeptide_rpt TIGRFAM 221 255
IPR002885 Pentatricopeptide_rpt TIGRFAM 148 183
IPR002885 Pentatricopeptide_rpt TIGRFAM 257 289
IPR002885 Pentatricopeptide_rpt TIGRFAM 572 604
IPR002885 Pentatricopeptide_rpt TIGRFAM 466 499
IPR002885 Pentatricopeptide_rpt TIGRFAM 606 640
IPR002885 Pentatricopeptide_rpt TIGRFAM 326 360
IPR002885 Pentatricopeptide_rpt TIGRFAM 537 569
IPR002885 Pentatricopeptide_rpt TIGRFAM 362 394
IPR002885 Pentatricopeptide_rpt TIGRFAM 502 534
IPR002885 Pentatricopeptide_rpt TIGRFAM 113 142
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 604 638
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 394 428
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 289 323
IPR011990 TPR-like_helical_dom_sf Gene3D 401 517
IPR011990 TPR-like_helical_dom_sf Gene3D 10 171
IPR033443 PPR_long Pfam 226 388
IPR011990 TPR-like_helical_dom_sf Gene3D 518 697
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 464 498
IPR002885 Pentatricopeptide_rpt Pfam 148 195
IPR002885 Pentatricopeptide_rpt Pfam 463 511
IPR002885 Pentatricopeptide_rpt Pfam 569 615
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 254 288
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 219 253
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 182 216
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 146 181
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 569 603
IPR002885 Pentatricopeptide_rpt Pfam 114 140
IPR002885 Pentatricopeptide_rpt Pfam 537 562
IPR002885 Pentatricopeptide_rpt Pfam 432 461
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 534 568
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 359 393
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 499 533
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 111 145
IPR002885 Pentatricopeptide_rpt Pfam 389 419
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 429 463
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 324 358

No CAZYmes available for this sequence

No external refs found!