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  5. Sevir.1G225800.1

Sevir.1G225800.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0015176 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015176_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.1G225800.1 No neighbors in network
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.1G225800.1
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_49


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 364 408
IPR002885 Pentatricopeptide_rpt Pfam 257 306
IPR011990 TPR-like_helical_dom_sf Gene3D 57 203
IPR011990 TPR-like_helical_dom_sf Gene3D 412 499
IPR011990 TPR-like_helical_dom_sf Gene3D 204 304
IPR011990 TPR-like_helical_dom_sf Gene3D 305 411
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 223 257
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 364 398
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 258 292
IPR002885 Pentatricopeptide_rpt Pfam 432 464
IPR002885 Pentatricopeptide_rpt Pfam 324 353
IPR002885 Pentatricopeptide_rpt Pfam 220 251
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 436 470
IPR002885 Pentatricopeptide_rpt TIGRFAM 439 470
IPR002885 Pentatricopeptide_rpt TIGRFAM 367 399
IPR002885 Pentatricopeptide_rpt TIGRFAM 225 259
IPR002885 Pentatricopeptide_rpt TIGRFAM 123 153
IPR002885 Pentatricopeptide_rpt TIGRFAM 260 294
IPR002885 Pentatricopeptide_rpt TIGRFAM 332 364
IPR002885 Pentatricopeptide_rpt TIGRFAM 295 329
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 328 363
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 293 327
IPR002885 Pentatricopeptide_rpt Pfam 192 213
IPR002885 Pentatricopeptide_rpt Pfam 124 152

No CAZYmes available for this sequence

No external refs found!