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  5. Seita.7G190800.1

Seita.7G190800.1


Description : expansin B2


Gene families : OG_01_0004607 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004607_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.7G190800.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_115


Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM GOs from InterProScan
BP GO:0019953 sexual reproduction ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR007117 Expansin_CBD Pfam 196 279
IPR036749 Expansin_CBD_sf Gene3D 191 294
IPR036908 RlpA-like_sf SUPERFAMILY 59 215
IPR005795 LolPI PRINTS 124 134
IPR005795 LolPI PRINTS 104 115
IPR005795 LolPI PRINTS 198 213
IPR005795 LolPI PRINTS 214 229
IPR005795 LolPI PRINTS 266 283
IPR007117 Expansin_CBD ProSiteProfiles 207 290
IPR036749 Expansin_CBD_sf SUPERFAMILY 196 290
IPR009009 RlpA-like_DPBB Pfam 103 184
IPR007112 Expansin/allergen_DPBB_dom ProSiteProfiles 84 194
IPR007112 Expansin/allergen_DPBB_dom SMART 102 184
IPR036908 RlpA-like_sf Gene3D 52 190
IPR007118 Expan_Lol_pI PRINTS 177 193
IPR007118 Expan_Lol_pI PRINTS 65 80
IPR007118 Expan_Lol_pI PRINTS 106 124
IPR007118 Expan_Lol_pI PRINTS 83 101
IPR007118 Expan_Lol_pI PRINTS 235 249
IPR007118 Expan_Lol_pI PRINTS 276 290
IPR005795 LolPI PRINTS 124 134
IPR005795 LolPI PRINTS 104 115
IPR005795 LolPI PRINTS 198 213
IPR005795 LolPI PRINTS 214 229
IPR005795 LolPI PRINTS 266 283
IPR007117 Expansin_CBD ProSiteProfiles 207 290
IPR009009 RlpA-like_DPBB Pfam 103 184
IPR036908 RlpA-like_sf Gene3D 52 190
IPR007112 Expansin/allergen_DPBB_dom ProSiteProfiles 84 194
IPR036908 RlpA-like_sf SUPERFAMILY 59 215
IPR007118 Expan_Lol_pI PRINTS 177 193
IPR007118 Expan_Lol_pI PRINTS 65 80
IPR007118 Expan_Lol_pI PRINTS 106 124
IPR007118 Expan_Lol_pI PRINTS 83 101
IPR007118 Expan_Lol_pI PRINTS 235 249
IPR007118 Expan_Lol_pI PRINTS 276 290
IPR036749 Expansin_CBD_sf SUPERFAMILY 196 290
IPR007117 Expansin_CBD Pfam 196 279
IPR007112 Expansin/allergen_DPBB_dom SMART 102 184
IPR036749 Expansin_CBD_sf Gene3D 191 294
HMM Family HMM Length Query Length e-Value Query Start Query End
CBM63 78 297 1.8e-05 198 274
No external refs found!