Seita.7G244600.1

Description : transducin family protein / WD-40 repeat family protein

Gene families : OG_01_0011507 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011507_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.7G244600.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_217

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	ISM	GOs from InterProScan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR018983	U3_snoRNA-assocProt_15_C	Pfam	391	532
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	47	343
IPR001680	WD40_rpt	SMART	220	257
IPR001680	WD40_rpt	SMART	84	123
IPR001680	WD40_rpt	SMART	261	304
IPR001680	WD40_rpt	SMART	174	215
IPR001680	WD40_rpt	SMART	129	171
IPR001680	WD40_rpt	SMART	307	345
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	229	369
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	25	227
IPR001680	WD40_rpt	ProSiteProfiles	182	224
IPR001680	WD40_rpt	Pfam	228	257
IPR001680	WD40_rpt	Pfam	311	342
IPR001680	WD40_rpt	Pfam	184	215
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	229	369
IPR001680	WD40_rpt	SMART	220	257
IPR001680	WD40_rpt	SMART	84	123
IPR001680	WD40_rpt	SMART	261	304
IPR001680	WD40_rpt	SMART	129	171
IPR001680	WD40_rpt	SMART	174	215
IPR001680	WD40_rpt	SMART	307	345
IPR001680	WD40_rpt	Pfam	228	257
IPR001680	WD40_rpt	Pfam	184	215
IPR018983	U3_snoRNA-assocProt_15_C	Pfam	391	532
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	25	227
IPR001680	WD40_rpt	ProSiteProfiles	182	224
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	47	343

No CAZYmes available for this sequence

External Links

No external refs found!

Seita.7G244600.1

Expression Profile

Co-expression Networks

Functional Annotation