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  5. Seita.7G245500.1

Seita.7G245500.1


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0008061 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008061_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.7G245500.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_127


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 89 169
IPR000504 RRM_dom ProSiteProfiles 180 259
IPR000504 RRM_dom Pfam 286 349
IPR000504 RRM_dom Pfam 182 251
IPR000504 RRM_dom Pfam 92 160
IPR035979 RBD_domain_sf SUPERFAMILY 58 171
IPR035979 RBD_domain_sf SUPERFAMILY 171 262
IPR000504 RRM_dom SMART 91 164
IPR000504 RRM_dom SMART 181 255
IPR000504 RRM_dom SMART 285 352
IPR035979 RBD_domain_sf SUPERFAMILY 268 385
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 265 397
IPR000504 RRM_dom ProSiteProfiles 90 170
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 179 255
IPR000504 RRM_dom ProSiteProfiles 284 356
IPR035979 RBD_domain_sf SUPERFAMILY 171 262
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 89 169
IPR000504 RRM_dom ProSiteProfiles 90 170
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 179 255
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 265 397
IPR000504 RRM_dom ProSiteProfiles 284 356
IPR000504 RRM_dom SMART 91 164
IPR000504 RRM_dom SMART 181 255
IPR000504 RRM_dom SMART 285 352
IPR035979 RBD_domain_sf SUPERFAMILY 58 171
IPR000504 RRM_dom ProSiteProfiles 180 259
IPR035979 RBD_domain_sf SUPERFAMILY 268 385
IPR000504 RRM_dom Pfam 286 349
IPR000504 RRM_dom Pfam 182 251
IPR000504 RRM_dom Pfam 92 161

No CAZYmes available for this sequence

No external refs found!