Seita.7G254600.1

Description : DNA repair and meiosis protein (Mre11)

Gene families : OG_01_0003033 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003033_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.7G254600.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_202

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	ISM	GOs from InterProScan
MF	GO:0004520	DNA endonuclease activity	ISM	GOs from InterProScan
MF	GO:0004527	exonuclease activity	None	Extended
MF	GO:0004529	DNA exonuclease activity	None	Extended
MF	GO:0004536	DNA nuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006302	double-strand break repair	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008296	3'-5'-DNA exonuclease activity	ISM	GOs from InterProScan
MF	GO:0008408	3'-5' exonuclease activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	ISM	GOs from InterProScan
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0016895	DNA exonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0030145	manganese ion binding	ISM	GOs from InterProScan
CC	GO:0030870	Mre11 complex	ISM	GOs from InterProScan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR041796	Mre11_N	CDD	18	286
IPR038487	Mre11_capping_dom	Gene3D	318	417
IPR007281	Mre11_DNA-bd	SMART	306	460
IPR004843	Calcineurin-like_PHP_ApaH	Pfam	17	261
IPR029052	Metallo-depent_PP-like	SUPERFAMILY	17	355
IPR029052	Metallo-depent_PP-like	Gene3D	12	317
IPR007281	Mre11_DNA-bd	Pfam	307	460
IPR003701	Mre11	PIRSF	5	695
IPR003701	Mre11	NCBIfam	15	408
IPR007281	Mre11_DNA-bd	Pfam	307	460
IPR041796	Mre11_N	CDD	18	286
IPR004843	Calcineurin-like_PHP_ApaH	Pfam	17	261
IPR029052	Metallo-depent_PP-like	SUPERFAMILY	17	355
IPR003701	Mre11	TIGRFAM	15	408
IPR007281	Mre11_DNA-bd	SMART	306	460
IPR029052	Metallo-depent_PP-like	Gene3D	12	317
IPR038487	Mre11_capping_dom	Gene3D	318	417
IPR003701	Mre11	PIRSF	5	695

No CAZYmes available for this sequence

External Links

No external refs found!

Seita.7G254600.1

Expression Profile

Co-expression Networks

Functional Annotation