Sevir.6G252500.1

Description : Rhamnogalacturonate lyase family protein

Gene families : OG_01_0002264 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002264_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.6G252500.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.6G252500.1	No neighbors in network
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_3

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0005975	carbohydrate metabolic process	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0030246	carbohydrate binding	ISM	GOs from InterProScan
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR029413	RG-lyase_II	Pfam	378	449
IPR014718	GH-type_carb-bd	Gene3D	29	331
IPR013784	Carb-bd-like_fold	SUPERFAMILY	355	449
IPR011013	Gal_mutarotase_sf_dom	SUPERFAMILY	41	316
IPR008979	Galactose-bd-like_sf	SUPERFAMILY	461	653
IPR029413	RG-lyase_II	CDD	355	454
IPR029411	RG-lyase_III	Pfam	464	652
IPR010325	Rhamnogal_lyase	Pfam	24	224

No CAZYmes available for this sequence

External Links

No external refs found!