Seita.7G274000.1

Description : SRP72 RNA-binding domain

Gene families : OG_01_0012540 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012540_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.7G274000.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_127

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	None	Extended
BP	GO:0006613	cotranslational protein targeting to membrane	None	Extended
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	ISM	GOs from InterProScan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008312	7S RNA binding	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0045047	protein targeting to ER	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
CC	GO:0048500	signal recognition particle	ISM	GOs from InterProScan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0070972	protein localization to endoplasmic reticulum	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR031545	SRP72_TPR-like	Pfam	57	159
IPR026270	SRP72	PANTHER	1	671
IPR013699	Signal_recog_part_SRP72_RNA-bd	Pfam	567	611
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	246	501
IPR011990	TPR-like_helical_dom_sf	Gene3D	20	174
IPR026270	SRP72	PIRSF	12	672
IPR011990	TPR-like_helical_dom_sf	Gene3D	184	533
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	31	221
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	246	501
IPR013699	Signal_recog_part_SRP72_RNA-bd	Pfam	567	611
IPR026270	SRP72	PIRSF	12	672
IPR031545	SRP72_TPR-like	Pfam	57	159
IPR026270	SRP72	PANTHER	14	670
IPR011990	TPR-like_helical_dom_sf	Gene3D	184	533
IPR011990	TPR-like_helical_dom_sf	Gene3D	20	174
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	31	221

No CAZYmes available for this sequence

External Links

No external refs found!

Seita.7G274000.1

Expression Profile

Co-expression Networks

Functional Annotation