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  5. Seita.7G284300.1

Seita.7G284300.1


Description : SWITCH/sucrose nonfermenting 3C


Gene families : OG_01_0004978 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004978_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.7G284300.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_32


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR007526 SWIRM Pfam 199 277
IPR032451 SMARCC_C Pfam 589 661
IPR036388 WH-like_DNA-bd_sf Gene3D 193 280
IPR009057 Homeobox-like_sf SUPERFAMILY 187 279
IPR017884 SANT_dom ProSiteProfiles 418 469
IPR001005 SANT/Myb CDD 422 464
IPR000433 Znf_ZZ ProSiteProfiles 360 414
IPR001005 SANT/Myb Pfam 421 461
IPR009057 Homeobox-like_sf SUPERFAMILY 420 476
IPR007526 SWIRM ProSiteProfiles 187 286
IPR001005 SANT/Myb ProSiteProfiles 415 461
IPR001005 SANT/Myb SMART 419 467
IPR001005 SANT/Myb CDD 422 464
IPR009057 Homeobox-like_sf SUPERFAMILY 187 279
IPR007526 SWIRM ProSiteProfiles 187 286
IPR036388 WH-like_DNA-bd_sf Gene3D 193 280
IPR009057 Homeobox-like_sf SUPERFAMILY 420 476
IPR001005 SANT/Myb SMART 419 467
IPR001005 SANT/Myb ProSiteProfiles 415 461
IPR007526 SWIRM Pfam 190 277
IPR017884 SANT_dom ProSiteProfiles 418 469
IPR017930 Myb_dom Pfam 422 461
IPR032451 SMARCC_C Pfam 589 661

No CAZYmes available for this sequence

No external refs found!