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  5. Seita.7G301700.1

Seita.7G301700.1


Description : elongation factor P (EF-P) family protein


Gene families : OG_01_0006648 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006648_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.7G301700.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_57


Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity ISM GOs from InterProScan
CC GO:0005737 cytoplasm ISM GOs from InterProScan
BP GO:0006414 translational elongation ISM GOs from InterProScan
BP GO:0043043 peptide biosynthetic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001059 Transl_elong_P/YeiP_cen CDD 113 168
IPR012340 NA-bd_OB-fold Gene3D 170 226
IPR001059 Transl_elong_P/YeiP_cen SMART 109 163
IPR015365 Elong-fact-P_C Pfam 171 225
IPR011768 Transl_elongation_fac_P Hamap 43 226
IPR011768 Transl_elongation_fac_P NCBIfam 45 226
IPR001059 Transl_elong_P/YeiP_cen Pfam 113 163
IPR013185 Transl_elong_KOW-like Pfam 45 101
IPR012340 NA-bd_OB-fold SUPERFAMILY 108 171
IPR008991 Translation_prot_SH3-like_sf SUPERFAMILY 41 105
IPR015365 Elong-fact-P_C CDD 171 225
IPR020599 Transl_elong_fac_P/YeiP PIRSF 42 226
IPR012340 NA-bd_OB-fold SUPERFAMILY 170 226
IPR012340 NA-bd_OB-fold Gene3D 107 168
IPR013852 Transl_elong_P/YeiP_CS ProSitePatterns 191 210
IPR014722 Rib_uL2_dom2 Gene3D 36 104
IPR020599 Transl_elong_fac_P/YeiP PANTHER 35 226
IPR015365 Elong-fact-P_C SMART 171 225
IPR001059 Transl_elong_P/YeiP_cen SMART 109 163
IPR013852 Transl_elong_P/YeiP_CS ProSitePatterns 191 210
IPR001059 Transl_elong_P/YeiP_cen Pfam 113 163
IPR011768 Transl_elongation_fac_P TIGRFAM 45 226
IPR014722 Rib_uL2_dom2 Gene3D 36 104
IPR015365 Elong-fact-P_C Pfam 171 225
IPR012340 NA-bd_OB-fold SUPERFAMILY 170 226
IPR020599 Transl_elong_fac_P/YeiP PIRSF 42 226
IPR011768 Transl_elongation_fac_P Hamap 43 226
IPR015365 Elong-fact-P_C SMART 171 225
IPR012340 NA-bd_OB-fold SUPERFAMILY 108 171
IPR001059 Transl_elong_P/YeiP_cen CDD 113 168
IPR015365 Elong-fact-P_C CDD 171 225
IPR013185 Transl_elong_KOW-like Pfam 45 101
IPR020599 Transl_elong_fac_P/YeiP PANTHER 15 226
IPR008991 Translation_prot_SH3-like_sf SUPERFAMILY 41 105

No CAZYmes available for this sequence

No external refs found!