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  5. Seita.7G325000.1

Seita.7G325000.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0006439 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006439_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.7G325000.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_127


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 620 654
IPR002885 Pentatricopeptide_rpt Pfam 650 682
IPR011990 TPR-like_helical_dom_sf Gene3D 265 363
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 375 631
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 515 549
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 375 409
IPR011990 TPR-like_helical_dom_sf Gene3D 364 458
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 305 339
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 234 268
IPR002885 Pentatricopeptide_rpt Pfam 374 423
IPR002885 Pentatricopeptide_rpt Pfam 444 489
IPR002885 Pentatricopeptide_rpt Pfam 305 351
IPR002885 Pentatricopeptide_rpt Pfam 233 279
IPR002885 Pentatricopeptide_rpt Pfam 584 633
IPR002885 Pentatricopeptide_rpt Pfam 515 562
IPR002885 Pentatricopeptide_rpt NCBIfam 377 410
IPR002885 Pentatricopeptide_rpt NCBIfam 552 585
IPR002885 Pentatricopeptide_rpt NCBIfam 517 551
IPR002885 Pentatricopeptide_rpt NCBIfam 342 376
IPR002885 Pentatricopeptide_rpt NCBIfam 413 446
IPR002885 Pentatricopeptide_rpt NCBIfam 587 621
IPR002885 Pentatricopeptide_rpt NCBIfam 622 655
IPR002885 Pentatricopeptide_rpt NCBIfam 236 265
IPR002885 Pentatricopeptide_rpt NCBIfam 657 690
IPR002885 Pentatricopeptide_rpt NCBIfam 447 481
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 445 479
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 271 301
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 550 584
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 410 444
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 340 374
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 585 619
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 655 689
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 199 233
IPR011990 TPR-like_helical_dom_sf Gene3D 173 264
IPR011990 TPR-like_helical_dom_sf Gene3D 459 565
IPR011990 TPR-like_helical_dom_sf Gene3D 569 718
IPR011990 TPR-like_helical_dom_sf Gene3D 173 264
IPR002885 Pentatricopeptide_rpt Pfam 307 337
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 199 233
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 410 444
IPR002885 Pentatricopeptide_rpt Pfam 650 682
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 445 479
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 271 301
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 585 619
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 340 374
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 234 268
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 375 631
IPR011990 TPR-like_helical_dom_sf Gene3D 459 565
IPR011990 TPR-like_helical_dom_sf Gene3D 569 718
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 550 584
IPR002885 Pentatricopeptide_rpt Pfam 409 455
IPR002885 Pentatricopeptide_rpt Pfam 515 562
IPR002885 Pentatricopeptide_rpt Pfam 339 388
IPR002885 Pentatricopeptide_rpt Pfam 233 279
IPR002885 Pentatricopeptide_rpt Pfam 584 633
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 655 689
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 620 654
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 515 549
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 375 409
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 305 339
IPR011990 TPR-like_helical_dom_sf Gene3D 364 458
IPR011990 TPR-like_helical_dom_sf Gene3D 265 363
IPR002885 Pentatricopeptide_rpt TIGRFAM 517 551
IPR002885 Pentatricopeptide_rpt TIGRFAM 377 410
IPR002885 Pentatricopeptide_rpt TIGRFAM 657 690
IPR002885 Pentatricopeptide_rpt TIGRFAM 587 621
IPR002885 Pentatricopeptide_rpt TIGRFAM 413 446
IPR002885 Pentatricopeptide_rpt TIGRFAM 447 481
IPR002885 Pentatricopeptide_rpt TIGRFAM 552 585
IPR002885 Pentatricopeptide_rpt TIGRFAM 622 655
IPR002885 Pentatricopeptide_rpt TIGRFAM 236 265
IPR002885 Pentatricopeptide_rpt TIGRFAM 342 376

No CAZYmes available for this sequence

No external refs found!