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  5. Seita.8G012900.1

Seita.8G012900.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0015007 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015007_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.8G012900.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_94


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 668 702
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 424 458
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 253 287
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 323 357
IPR011990 TPR-like_helical_dom_sf Gene3D 625 719
IPR011990 TPR-like_helical_dom_sf Gene3D 720 835
IPR011990 TPR-like_helical_dom_sf Gene3D 269 392
IPR002885 Pentatricopeptide_rpt Pfam 698 716
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 633 667
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 563 597
IPR002885 Pentatricopeptide_rpt Pfam 220 247
IPR002885 Pentatricopeptide_rpt Pfam 531 560
IPR002885 Pentatricopeptide_rpt Pfam 496 525
IPR002885 Pentatricopeptide_rpt Pfam 188 213
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 528 562
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 288 322
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 459 493
IPR011990 TPR-like_helical_dom_sf Gene3D 393 490
IPR011990 TPR-like_helical_dom_sf Gene3D 142 268
IPR011990 TPR-like_helical_dom_sf Gene3D 493 624
IPR002885 Pentatricopeptide_rpt Pfam 252 301
IPR002885 Pentatricopeptide_rpt Pfam 323 367
IPR002885 Pentatricopeptide_rpt Pfam 424 472
IPR002885 Pentatricopeptide_rpt Pfam 632 680
IPR002885 Pentatricopeptide_rpt Pfam 562 611
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 182 216
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 598 632
IPR002885 Pentatricopeptide_rpt NCBIfam 565 599
IPR002885 Pentatricopeptide_rpt NCBIfam 635 669
IPR002885 Pentatricopeptide_rpt NCBIfam 603 634
IPR002885 Pentatricopeptide_rpt NCBIfam 531 563
IPR002885 Pentatricopeptide_rpt NCBIfam 670 703
IPR002885 Pentatricopeptide_rpt NCBIfam 256 289
IPR002885 Pentatricopeptide_rpt NCBIfam 461 494
IPR002885 Pentatricopeptide_rpt NCBIfam 428 459
IPR002885 Pentatricopeptide_rpt NCBIfam 290 323
IPR002885 Pentatricopeptide_rpt NCBIfam 325 359
IPR011990 TPR-like_helical_dom_sf Gene3D 625 719
IPR011990 TPR-like_helical_dom_sf Gene3D 720 835
IPR011990 TPR-like_helical_dom_sf Gene3D 269 392
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 288 322
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 563 597
IPR002885 Pentatricopeptide_rpt TIGRFAM 670 703
IPR002885 Pentatricopeptide_rpt TIGRFAM 603 634
IPR002885 Pentatricopeptide_rpt TIGRFAM 531 563
IPR002885 Pentatricopeptide_rpt TIGRFAM 635 669
IPR002885 Pentatricopeptide_rpt TIGRFAM 290 323
IPR002885 Pentatricopeptide_rpt TIGRFAM 428 459
IPR002885 Pentatricopeptide_rpt TIGRFAM 256 289
IPR002885 Pentatricopeptide_rpt TIGRFAM 188 217
IPR002885 Pentatricopeptide_rpt TIGRFAM 325 359
IPR002885 Pentatricopeptide_rpt TIGRFAM 461 494
IPR002885 Pentatricopeptide_rpt TIGRFAM 565 599
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 424 458
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 598 632
IPR011990 TPR-like_helical_dom_sf Gene3D 142 268
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 182 216
IPR002885 Pentatricopeptide_rpt Pfam 496 525
IPR002885 Pentatricopeptide_rpt Pfam 220 247
IPR002885 Pentatricopeptide_rpt Pfam 188 213
IPR002885 Pentatricopeptide_rpt Pfam 531 560
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 323 357
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 253 287
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 668 702
IPR011990 TPR-like_helical_dom_sf Gene3D 493 624
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 459 493
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 528 562
IPR002885 Pentatricopeptide_rpt Pfam 252 301
IPR002885 Pentatricopeptide_rpt Pfam 424 472
IPR002885 Pentatricopeptide_rpt Pfam 562 611
IPR002885 Pentatricopeptide_rpt Pfam 323 366
IPR002885 Pentatricopeptide_rpt Pfam 632 681
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 633 667
IPR002885 Pentatricopeptide_rpt Pfam 698 716
IPR011990 TPR-like_helical_dom_sf Gene3D 393 490

No CAZYmes available for this sequence

No external refs found!