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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0006439 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006439_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.8G034300.1 | |
| Cluster | Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_82 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 188 | 217 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 366 | 398 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 259 | 292 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 225 | 253 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 574 | 607 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 399 | 433 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 609 | 642 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 294 | 327 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 539 | 573 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 504 | 537 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 469 | 502 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 329 | 362 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 186 | 220 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 151 | 185 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 537 | 571 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 327 | 361 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 466 | 514 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 185 | 217 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 361 | 410 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 291 | 340 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 609 | 653 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 536 | 585 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 572 | 606 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 502 | 536 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 257 | 291 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 556 | 670 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 292 | 326 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 607 | 641 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 259 | 289 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 225 | 251 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 237 | 343 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 443 | 555 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 130 | 236 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 344 | 442 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 223 | 253 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 397 | 431 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 467 | 501 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 338 | 636 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 362 | 396 |
No CAZYmes available for this sequence
| No external refs found! |