Seita.8G054300.1

Description : cleavage stimulating factor 64

Gene families : OG_01_0003298 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003298_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.8G054300.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_11

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	ISM	GOs from InterProScan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000504	RRM_dom	SMART	49	122
IPR000504	RRM_dom	ProSiteProfiles	48	126
IPR025742	CSTF2_hinge	Pfam	205	267
IPR035979	RBD_domain_sf	SUPERFAMILY	48	152
IPR038192	CSTF_C_sf	Gene3D	491	531
IPR000504	RRM_dom	Pfam	50	120
IPR026896	CSTF_C	Pfam	497	530
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	46	160
IPR000504	RRM_dom	Pfam	50	120
IPR000504	RRM_dom	SMART	49	122
IPR025742	CSTF2_hinge	Pfam	205	267
IPR035979	RBD_domain_sf	SUPERFAMILY	48	152
IPR000504	RRM_dom	ProSiteProfiles	48	126
IPR026896	CSTF_C	Pfam	497	528
IPR038192	CSTF_C_sf	Gene3D	491	531
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	46	160

No CAZYmes available for this sequence

External Links

No external refs found!