- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : pumilio 24
Gene families : OG_01_0002246 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002246_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.9G025100.1 | |
| Cluster | Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_217 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR040059 | PUM3 | PANTHER | 8 | 661 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 156 | 191 |
| IPR011989 | ARM-like | Gene3D | 327 | 652 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 340 | 375 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 156 | 191 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 120 | 155 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 376 | 412 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 192 | 227 |
| IPR016024 | ARM-type_fold | SUPERFAMILY | 101 | 313 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 136 | 155 |
| IPR011989 | ARM-like | Gene3D | 92 | 326 |
| IPR016024 | ARM-type_fold | SUPERFAMILY | 342 | 446 |
| IPR033133 | PUM-HD | ProSiteProfiles | 92 | 439 |
| IPR012959 | CPL_dom | Pfam | 491 | 596 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 136 | 155 |
| IPR011989 | ARM-like | Gene3D | 92 | 326 |
| IPR033133 | PUM-HD | ProSiteProfiles | 92 | 439 |
| IPR012959 | CPL_dom | Pfam | 493 | 596 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 340 | 375 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 156 | 191 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 120 | 155 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 376 | 412 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 192 | 227 |
| IPR016024 | ARM-type_fold | SUPERFAMILY | 342 | 446 |
| IPR016024 | ARM-type_fold | SUPERFAMILY | 101 | 313 |
| IPR011989 | ARM-like | Gene3D | 327 | 652 |
| IPR040059 | PUM3 | PANTHER | 36 | 662 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 156 | 191 |
No CAZYmes available for this sequence
| No external refs found! |