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  5. Seita.9G070200.1

Seita.9G070200.1


Description : Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein


Gene families : OG_01_0001389 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001389_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.9G070200.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_94


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000504 RRM_dom ProSiteProfiles 227 303
IPR035979 RBD_domain_sf SUPERFAMILY 238 319
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 233 305
IPR000504 RRM_dom Pfam 239 283
IPR032297 Torus Pfam 113 142
IPR036855 Znf_CCCH_sf SUPERFAMILY 113 138
IPR000571 Znf_CCCH SMART 112 136
IPR000504 RRM_dom SMART 228 298
IPR000571 Znf_CCCH ProSiteProfiles 115 137
IPR034365 AtC3H46-like_RRM CDD 229 298
IPR035979 RBD_domain_sf SUPERFAMILY 238 319
IPR036855 Znf_CCCH_sf SUPERFAMILY 113 138
IPR000504 RRM_dom SMART 228 298
IPR034365 AtC3H46-like_RRM CDD 229 298
IPR000571 Znf_CCCH ProSiteProfiles 115 137
IPR032297 Torus Pfam 113 142
IPR000504 RRM_dom Pfam 239 284
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 233 305
IPR000504 RRM_dom ProSiteProfiles 227 303
IPR000571 Znf_CCCH SMART 112 136

No CAZYmes available for this sequence

No external refs found!