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  5. Seita.9G119500.1

Seita.9G119500.1


Description : Coatomer, alpha subunit


Gene families : OG_01_0003245 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003245_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.9G119500.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_32


Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006886 intracellular protein transport ISM GOs from InterProScan
BP GO:0016192 vesicle-mediated transport ISM GOs from InterProScan
CC GO:0030117 membrane coat ISM GOs from InterProScan
CC GO:0030126 COPI vesicle coat ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt ProSiteProfiles 200 241
IPR016391 Coatomer_asu PIRSF 1 1215
IPR001680 WD40_rpt ProSiteProfiles 131 164
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 1 319
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 4 315
IPR001680 WD40_rpt ProSiteProfiles 89 130
IPR047312 Coatomer_alpha_WD-assoc_reg CDD 323 776
IPR001680 WD40_rpt SMART 82 121
IPR001680 WD40_rpt SMART 40 79
IPR001680 WD40_rpt SMART 279 317
IPR001680 WD40_rpt SMART 237 276
IPR001680 WD40_rpt SMART 2 37
IPR001680 WD40_rpt SMART 193 232
IPR001680 WD40_rpt SMART 124 163
IPR020472 G-protein_beta_WD-40_rep PRINTS 263 277
IPR020472 G-protein_beta_WD-40_rep PRINTS 150 164
IPR020472 G-protein_beta_WD-40_rep PRINTS 108 122
IPR019775 WD40_repeat_CS ProSitePatterns 150 164
IPR010714 Coatomer_asu_C Pfam 815 1219
IPR001680 WD40_rpt Pfam 198 231
IPR001680 WD40_rpt Pfam 42 79
IPR001680 WD40_rpt Pfam 84 121
IPR001680 WD40_rpt Pfam 241 276
IPR001680 WD40_rpt Pfam 126 163
IPR001680 WD40_rpt ProSiteProfiles 244 285
IPR001680 WD40_rpt ProSiteProfiles 47 88
IPR006692 Coatomer_WD-assoc_reg Pfam 343 768
IPR001680 WD40_rpt ProSiteProfiles 47 88
IPR001680 WD40_rpt Pfam 126 163
IPR001680 WD40_rpt Pfam 241 276
IPR001680 WD40_rpt Pfam 198 231
IPR001680 WD40_rpt Pfam 84 121
IPR001680 WD40_rpt Pfam 44 79
IPR020472 G-protein_beta_WD-40_rep PRINTS 263 277
IPR020472 G-protein_beta_WD-40_rep PRINTS 150 164
IPR020472 G-protein_beta_WD-40_rep PRINTS 108 122
IPR010714 Coatomer_asu_C Pfam 815 1219
IPR019775 WD40_repeat_CS ProSitePatterns 150 164
IPR001680 WD40_rpt SMART 82 121
IPR001680 WD40_rpt SMART 40 79
IPR001680 WD40_rpt SMART 279 317
IPR001680 WD40_rpt SMART 237 276
IPR001680 WD40_rpt SMART 193 232
IPR001680 WD40_rpt SMART 2 37
IPR001680 WD40_rpt SMART 124 163
IPR001680 WD40_rpt ProSiteProfiles 131 164
IPR006692 Coatomer_WD-assoc_reg Pfam 348 768
IPR016391 Coatomer_asu PIRSF 1 1215
IPR001680 WD40_rpt ProSiteProfiles 244 285
IPR001680 WD40_rpt ProSiteProfiles 89 130
IPR001680 WD40_rpt ProSiteProfiles 200 241
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 4 315
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 1 319

No CAZYmes available for this sequence

No external refs found!