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  5. Seita.9G128700.1

Seita.9G128700.1


Description : CCCH-type zinc finger protein with ARM repeat domain


Gene families : OG_01_0013260 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013260_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.9G128700.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_32


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002110 Ankyrin_rpt SMART 126 158
IPR002110 Ankyrin_rpt SMART 91 121
IPR002110 Ankyrin_rpt ProSiteProfiles 126 161
IPR000571 Znf_CCCH SMART 304 330
IPR000571 Znf_CCCH SMART 339 362
IPR036770 Ankyrin_rpt-contain_sf SUPERFAMILY 91 169
IPR036770 Ankyrin_rpt-contain_sf Gene3D 49 178
IPR000571 Znf_CCCH Pfam 308 329
IPR045234 Unkempt-like PANTHER 86 690
IPR002110 Ankyrin_rpt Pfam 91 160
IPR000571 Znf_CCCH ProSiteProfiles 309 331
IPR000571 Znf_CCCH ProSiteProfiles 309 331
IPR002110 Ankyrin_rpt Pfam 91 160
IPR036770 Ankyrin_rpt-contain_sf Gene3D 49 178
IPR000571 Znf_CCCH Pfam 309 329
IPR002110 Ankyrin_rpt SMART 126 158
IPR002110 Ankyrin_rpt SMART 91 121
IPR002110 Ankyrin_rpt ProSiteProfiles 126 161
IPR036770 Ankyrin_rpt-contain_sf SUPERFAMILY 91 169
IPR045234 Unkempt-like PANTHER 32 747
IPR000571 Znf_CCCH SMART 304 330
IPR000571 Znf_CCCH SMART 339 362

No CAZYmes available for this sequence

No external refs found!