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  5. Seita.9G141800.1

Seita.9G141800.1


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0018277 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0018277_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.9G141800.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_15


Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000743 Glyco_hydro_28 ProSitePatterns 259 272
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 51 414
IPR000743 Glyco_hydro_28 Pfam 80 409
IPR006626 PbH1 SMART 202 228
IPR006626 PbH1 SMART 252 272
IPR006626 PbH1 SMART 229 250
IPR006626 PbH1 SMART 347 387
IPR006626 PbH1 SMART 282 303
IPR012334 Pectin_lyas_fold Gene3D 47 418
IPR000743 Glyco_hydro_28 ProSitePatterns 259 272
IPR006626 PbH1 SMART 202 228
IPR006626 PbH1 SMART 252 272
IPR006626 PbH1 SMART 229 250
IPR006626 PbH1 SMART 347 387
IPR006626 PbH1 SMART 282 303
IPR000743 Glyco_hydro_28 Pfam 80 409
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 51 414
IPR012334 Pectin_lyas_fold Gene3D 47 418
HMM Family HMM Length Query Length e-Value Query Start Query End
GH28 325 421 2e-92 77 408
No external refs found!