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  5. Seita.9G151300.1

Seita.9G151300.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0016566 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016566_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.9G151300.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_115


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 509 543
IPR002885 Pentatricopeptide_rpt NCBIfam 410 444
IPR002885 Pentatricopeptide_rpt NCBIfam 511 544
IPR002885 Pentatricopeptide_rpt NCBIfam 382 405
IPR002885 Pentatricopeptide_rpt NCBIfam 308 339
IPR002885 Pentatricopeptide_rpt NCBIfam 481 511
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 306 340
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 478 508
IPR045215 PPR_prot_At1g15510 PANTHER 345 706
IPR011990 TPR-like_helical_dom_sf Gene3D 146 265
IPR011990 TPR-like_helical_dom_sf Gene3D 266 353
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 377 407
IPR002885 Pentatricopeptide_rpt Pfam 100 146
IPR002885 Pentatricopeptide_rpt Pfam 407 455
IPR002885 Pentatricopeptide_rpt Pfam 508 556
IPR002885 Pentatricopeptide_rpt Pfam 203 229
IPR002885 Pentatricopeptide_rpt Pfam 382 404
IPR002885 Pentatricopeptide_rpt Pfam 308 338
IPR002885 Pentatricopeptide_rpt Pfam 584 607
IPR046849 Eplus_motif Pfam 694 716
IPR011990 TPR-like_helical_dom_sf Gene3D 405 465
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 101 131
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 408 442
IPR046848 E_motif Pfam 626 688
IPR032867 DYW_dom Pfam 724 816
IPR011990 TPR-like_helical_dom_sf Gene3D 78 145
IPR011990 TPR-like_helical_dom_sf Gene3D 483 704
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 101 131
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 377 407
IPR032867 DYW_dom Pfam 682 806
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 306 340
IPR011990 TPR-like_helical_dom_sf Gene3D 78 145
IPR011990 TPR-like_helical_dom_sf Gene3D 483 704
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 478 508
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 408 442
IPR002885 Pentatricopeptide_rpt Pfam 407 455
IPR002885 Pentatricopeptide_rpt Pfam 509 556
IPR002885 Pentatricopeptide_rpt Pfam 100 146
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 509 543
IPR002885 Pentatricopeptide_rpt TIGRFAM 511 544
IPR002885 Pentatricopeptide_rpt TIGRFAM 382 405
IPR002885 Pentatricopeptide_rpt TIGRFAM 481 511
IPR002885 Pentatricopeptide_rpt TIGRFAM 546 579
IPR002885 Pentatricopeptide_rpt TIGRFAM 410 444
IPR002885 Pentatricopeptide_rpt TIGRFAM 308 339
IPR011990 TPR-like_helical_dom_sf Gene3D 146 265
IPR011990 TPR-like_helical_dom_sf Gene3D 266 353
IPR002885 Pentatricopeptide_rpt Pfam 382 404
IPR002885 Pentatricopeptide_rpt Pfam 584 607
IPR002885 Pentatricopeptide_rpt Pfam 203 229
IPR002885 Pentatricopeptide_rpt Pfam 308 338
IPR002885 Pentatricopeptide_rpt Pfam 481 508
IPR011990 TPR-like_helical_dom_sf Gene3D 405 465

No CAZYmes available for this sequence

No external refs found!