Seita.9G178000.1

Description : DNA-binding protein, putative

Gene families : OG_01_0002637 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002637_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.9G178000.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_127

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR047187	SF1_C_Upf1	CDD	447	635
IPR027417	P-loop_NTPase	Gene3D	28	429
IPR004483	SMUBP-2/Hcs1-like	NCBIfam	347	642
IPR027417	P-loop_NTPase	SUPERFAMILY	193	625
IPR041679	DNA2/NAM7-like_C	Pfam	422	618
IPR014001	Helicase_ATP-bd	SMART	195	432
IPR048761	SMUBP-2_HCS1_1B	Pfam	30	131
IPR027417	P-loop_NTPase	Gene3D	445	649
IPR003593	AAA+_ATPase	SMART	213	430
IPR041677	DNA2/NAM7_AAA_11	Pfam	198	413
IPR027417	P-loop_NTPase	Gene3D	28	429
IPR041679	DNA2/NAM7-like_C	CDD	447	635
IPR041677	DNA2/NAM7_AAA_11	Pfam	199	413
IPR014001	Helicase_ATP-bd	SMART	195	432
IPR041679	DNA2/NAM7-like_C	Pfam	422	618
IPR004483	SMUBP-2/Hcs1-like	TIGRFAM	347	642
IPR027417	P-loop_NTPase	Gene3D	445	649
IPR003593	AAA+_ATPase	SMART	213	430
IPR027417	P-loop_NTPase	SUPERFAMILY	193	625

No CAZYmes available for this sequence

External Links

No external refs found!