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  5. Seita.9G207300.1

Seita.9G207300.1


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0005395 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005395_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.9G207300.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_168


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008017 microtubule binding ISM GOs from InterProScan
CC GO:0008352 katanin complex ISM GOs from InterProScan
BP GO:0051013 microtubule severing ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR019775 WD40_repeat_CS ProSitePatterns 116 130
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 3 310
IPR020472 G-protein_beta_WD-40_rep PRINTS 158 172
IPR020472 G-protein_beta_WD-40_rep PRINTS 116 130
IPR020472 G-protein_beta_WD-40_rep PRINTS 200 214
IPR001680 WD40_rpt ProSiteProfiles 97 138
IPR026962 KTNB1 Hamap 1 841
IPR019775 WD40_repeat_CS ProSitePatterns 158 172
IPR001680 WD40_rpt ProSiteProfiles 139 180
IPR019775 WD40_repeat_CS ProSitePatterns 200 214
IPR001680 WD40_rpt ProSiteProfiles 55 96
IPR001680 WD40_rpt ProSiteProfiles 181 222
IPR001680 WD40_rpt Pfam 9 44
IPR001680 WD40_rpt Pfam 134 171
IPR001680 WD40_rpt Pfam 92 129
IPR001680 WD40_rpt Pfam 54 87
IPR001680 WD40_rpt Pfam 175 213
IPR001680 WD40_rpt ProSiteProfiles 12 54
IPR001680 WD40_rpt SMART 90 129
IPR001680 WD40_rpt SMART 132 171
IPR001680 WD40_rpt SMART 5 45
IPR001680 WD40_rpt SMART 174 213
IPR001680 WD40_rpt SMART 224 262
IPR001680 WD40_rpt SMART 48 87
IPR028021 Katanin_C-terminal Pfam 681 837
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 7 274
IPR001680 WD40_rpt ProSiteProfiles 181 222
IPR020472 G-protein_beta_WD-40_rep PRINTS 158 172
IPR020472 G-protein_beta_WD-40_rep PRINTS 116 130
IPR020472 G-protein_beta_WD-40_rep PRINTS 200 214
IPR028021 Katanin_C-terminal Pfam 681 837
IPR001680 WD40_rpt ProSiteProfiles 55 96
IPR019775 WD40_repeat_CS ProSitePatterns 116 130
IPR001680 WD40_rpt ProSiteProfiles 12 54
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 3 310
IPR001680 WD40_rpt ProSiteProfiles 97 138
IPR026962 KTNB1 Hamap 1 841
IPR019775 WD40_repeat_CS ProSitePatterns 158 172
IPR001680 WD40_rpt SMART 90 129
IPR001680 WD40_rpt SMART 132 171
IPR001680 WD40_rpt SMART 5 45
IPR001680 WD40_rpt SMART 174 213
IPR001680 WD40_rpt SMART 224 262
IPR001680 WD40_rpt SMART 48 87
IPR001680 WD40_rpt Pfam 175 213
IPR001680 WD40_rpt Pfam 134 171
IPR001680 WD40_rpt Pfam 93 129
IPR019775 WD40_repeat_CS ProSitePatterns 200 214
IPR001680 WD40_rpt ProSiteProfiles 139 180
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 7 274

No CAZYmes available for this sequence

No external refs found!