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  5. Seita.9G213100.1

Seita.9G213100.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0016414 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016414_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.9G213100.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_335


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 188 218
IPR002885 Pentatricopeptide_rpt Pfam 364 386
IPR002885 Pentatricopeptide_rpt Pfam 87 116
IPR002885 Pentatricopeptide_rpt Pfam 457 488
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 289 323
IPR046848 E_motif Pfam 509 569
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 390 424
IPR002885 Pentatricopeptide_rpt Pfam 289 336
IPR002885 Pentatricopeptide_rpt Pfam 391 437
IPR011990 TPR-like_helical_dom_sf Gene3D 6 145
IPR011990 TPR-like_helical_dom_sf Gene3D 364 607
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 85 119
IPR045215 PPR_prot_At1g15510 PANTHER 221 281
IPR032867 DYW_dom Pfam 605 697
IPR011990 TPR-like_helical_dom_sf Gene3D 286 356
IPR011990 TPR-like_helical_dom_sf Gene3D 155 285
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 425 460
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 366 548
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 186 220
IPR046849 Eplus_motif Pfam 574 601
IPR002885 Pentatricopeptide_rpt NCBIfam 465 488
IPR002885 Pentatricopeptide_rpt NCBIfam 294 325
IPR002885 Pentatricopeptide_rpt NCBIfam 188 218
IPR002885 Pentatricopeptide_rpt NCBIfam 393 425
IPR002885 Pentatricopeptide_rpt NCBIfam 87 120
IPR002885 Pentatricopeptide_rpt NCBIfam 427 460
IPR002885 Pentatricopeptide_rpt Pfam 457 488
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 85 119
IPR002885 Pentatricopeptide_rpt Pfam 392 437
IPR002885 Pentatricopeptide_rpt Pfam 289 336
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 390 424
IPR032867 DYW_dom Pfam 563 686
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 366 548
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 289 323
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 425 460
IPR011990 TPR-like_helical_dom_sf Gene3D 286 356
IPR011990 TPR-like_helical_dom_sf Gene3D 155 285
IPR002885 Pentatricopeptide_rpt Pfam 364 386
IPR002885 Pentatricopeptide_rpt Pfam 87 116
IPR002885 Pentatricopeptide_rpt Pfam 188 218
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 186 220
IPR002885 Pentatricopeptide_rpt TIGRFAM 188 218
IPR002885 Pentatricopeptide_rpt TIGRFAM 294 325
IPR002885 Pentatricopeptide_rpt TIGRFAM 465 488
IPR002885 Pentatricopeptide_rpt TIGRFAM 393 425
IPR002885 Pentatricopeptide_rpt TIGRFAM 427 460
IPR002885 Pentatricopeptide_rpt TIGRFAM 87 120
IPR011990 TPR-like_helical_dom_sf Gene3D 6 145
IPR011990 TPR-like_helical_dom_sf Gene3D 364 607

No CAZYmes available for this sequence

No external refs found!