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  5. Seita.9G215000.1

Seita.9G215000.1


Description : pleiotropic regulatory locus 1


Gene families : OG_01_0005632 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005632_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.9G215000.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_82


Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 144 477
IPR019775 WD40_repeat_CS ProSitePatterns 266 280
IPR045241 Prp46/PLRG1-like PANTHER 11 470
IPR001680 WD40_rpt ProSiteProfiles 163 204
IPR019775 WD40_repeat_CS ProSitePatterns 308 322
IPR001680 WD40_rpt ProSiteProfiles 205 246
IPR001680 WD40_rpt ProSiteProfiles 289 330
IPR001680 WD40_rpt Pfam 242 279
IPR001680 WD40_rpt Pfam 427 453
IPR001680 WD40_rpt Pfam 200 237
IPR001680 WD40_rpt Pfam 327 357
IPR001680 WD40_rpt Pfam 158 195
IPR001680 WD40_rpt Pfam 287 321
IPR001680 WD40_rpt ProSiteProfiles 247 288
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 153 454
IPR001680 WD40_rpt SMART 240 279
IPR001680 WD40_rpt SMART 416 454
IPR001680 WD40_rpt SMART 156 195
IPR001680 WD40_rpt SMART 282 321
IPR001680 WD40_rpt SMART 324 362
IPR001680 WD40_rpt SMART 198 237
IPR001680 WD40_rpt SMART 365 404
IPR020472 G-protein_beta_WD-40_rep PRINTS 308 322
IPR020472 G-protein_beta_WD-40_rep PRINTS 182 196
IPR020472 G-protein_beta_WD-40_rep PRINTS 266 280
IPR001680 WD40_rpt ProSiteProfiles 289 330
IPR045241 Prp46/PLRG1-like PANTHER 11 477
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 144 477
IPR020472 G-protein_beta_WD-40_rep PRINTS 308 322
IPR020472 G-protein_beta_WD-40_rep PRINTS 182 196
IPR020472 G-protein_beta_WD-40_rep PRINTS 266 280
IPR001680 WD40_rpt Pfam 426 454
IPR001680 WD40_rpt Pfam 286 321
IPR001680 WD40_rpt Pfam 242 279
IPR001680 WD40_rpt Pfam 202 237
IPR001680 WD40_rpt Pfam 158 195
IPR001680 WD40_rpt ProSiteProfiles 163 204
IPR019775 WD40_repeat_CS ProSitePatterns 266 280
IPR001680 WD40_rpt ProSiteProfiles 205 246
IPR001680 WD40_rpt SMART 240 279
IPR001680 WD40_rpt SMART 416 454
IPR001680 WD40_rpt SMART 156 195
IPR001680 WD40_rpt SMART 282 321
IPR001680 WD40_rpt SMART 324 362
IPR001680 WD40_rpt SMART 198 237
IPR001680 WD40_rpt SMART 365 404
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 153 454
IPR019775 WD40_repeat_CS ProSitePatterns 308 322
IPR001680 WD40_rpt ProSiteProfiles 247 288

No CAZYmes available for this sequence

No external refs found!