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  5. Seita.9G215600.1

Seita.9G215600.1


Description : Peptidoglycan-binding LysM domain-containing protein


Gene families : OG_01_0007344 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007344_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.9G215600.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_183


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR018392 LysM_dom Pfam 69 112
IPR045030 LYSM1-4 PANTHER 43 317
IPR036779 LysM_dom_sf SUPERFAMILY 67 112
IPR018392 LysM_dom ProSiteProfiles 67 111
IPR018392 LysM_dom SMART 68 112
IPR018392 LysM_dom CDD 69 111
IPR036779 LysM_dom_sf Gene3D 49 126
IPR036779 LysM_dom_sf Gene3D 49 126
IPR018392 LysM_dom Pfam 69 112
IPR036779 LysM_dom_sf SUPERFAMILY 67 112
IPR018392 LysM_dom SMART 68 112
IPR018392 LysM_dom CDD 69 111
IPR018392 LysM_dom ProSiteProfiles 67 111
IPR045030 LYSM1-4 PANTHER 1 361
HMM Family HMM Length Query Length e-Value Query Start Query End
CBM50 40 362 7.1e-06 69 112
No external refs found!