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  5. Seita.9G233500.1

Seita.9G233500.1


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0011598 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011598_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.9G233500.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_82


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000504 RRM_dom ProSiteProfiles 25 103
IPR035979 RBD_domain_sf SUPERFAMILY 26 195
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 16 111
IPR034159 SF3B4_RRM2 CDD 111 193
IPR000504 RRM_dom ProSiteProfiles 112 191
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 112 200
IPR000504 RRM_dom Pfam 28 97
IPR000504 RRM_dom Pfam 114 184
IPR034158 SF3B4_RRM1 CDD 28 100
IPR000504 RRM_dom SMART 26 99
IPR000504 RRM_dom SMART 113 187
IPR000504 RRM_dom ProSiteProfiles 25 103
IPR034158 SF3B4_RRM1 CDD 28 100
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 112 200
IPR000504 RRM_dom ProSiteProfiles 112 191
IPR000504 RRM_dom Pfam 28 97
IPR000504 RRM_dom Pfam 114 184
IPR000504 RRM_dom SMART 26 99
IPR000504 RRM_dom SMART 113 187
IPR034159 SF3B4_RRM2 CDD 111 193
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 16 111
IPR035979 RBD_domain_sf SUPERFAMILY 26 195

No CAZYmes available for this sequence

No external refs found!