Seita.9G233700.1

Description : ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding

Gene families : OG_01_0001648 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001648_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.9G233700.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_217

Type	GO Term	Name	Evidence	Source
BP	GO:0000027	ribosomal large subunit assembly	ISM	GOs from InterProScan
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022618	protein-RNA complex assembly	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071826	protein-RNA complex organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR027417	P-loop_NTPase	SUPERFAMILY	652	980
IPR041190	Midasin_AAA_lid_5	Pfam	921	1022
IPR012099	Midasin	PIRSF	271	5380
IPR012099	Midasin	PIRSF	1	281
IPR002035	VWF_A	ProSiteProfiles	5168	5369
IPR027417	P-loop_NTPase	Gene3D	1778	1951
IPR027417	P-loop_NTPase	Gene3D	326	495
IPR027417	P-loop_NTPase	Gene3D	2224	2368
IPR027417	P-loop_NTPase	Gene3D	1061	1232
IPR027417	P-loop_NTPase	SUPERFAMILY	334	554
IPR003593	AAA+_ATPase	SMART	666	950
IPR003593	AAA+_ATPase	SMART	1792	1944
IPR003593	AAA+_ATPase	SMART	1075	1220
IPR003593	AAA+_ATPase	SMART	2102	2366
IPR003593	AAA+_ATPase	SMART	1376	1612
IPR003593	AAA+_ATPase	SMART	338	483
IPR027417	P-loop_NTPase	SUPERFAMILY	1363	1665
IPR036465	vWFA_dom_sf	SUPERFAMILY	5167	5372
IPR027417	P-loop_NTPase	SUPERFAMILY	1785	2012
IPR027417	P-loop_NTPase	Gene3D	653	925
IPR027417	P-loop_NTPase	Gene3D	1353	1606
IPR027417	P-loop_NTPase	Gene3D	2085	2183
IPR040848	AAA_lid_7	Pfam	1949	2043
IPR040848	AAA_lid_7	Pfam	490	605
IPR040848	AAA_lid_7	Pfam	1226	1323
IPR025662	Sigma_54_int_dom_ATP-bd_1	ProSitePatterns	670	683
IPR048617	MDN1_AAA_lid_4	Pfam	1627	1687
IPR027417	P-loop_NTPase	SUPERFAMILY	2093	2363
IPR036465	vWFA_dom_sf	Gene3D	5167	5329
IPR011704	ATPase_dyneun-rel_AAA	Pfam	341	468
IPR011704	ATPase_dyneun-rel_AAA	Pfam	1795	1934
IPR011704	ATPase_dyneun-rel_AAA	Pfam	1379	1444
IPR011704	ATPase_dyneun-rel_AAA	Pfam	2236	2353
IPR011704	ATPase_dyneun-rel_AAA	Pfam	669	716
IPR011704	ATPase_dyneun-rel_AAA	Pfam	822	908
IPR011704	ATPase_dyneun-rel_AAA	Pfam	1514	1602
IPR011704	ATPase_dyneun-rel_AAA	Pfam	1078	1214
IPR027417	P-loop_NTPase	SUPERFAMILY	1051	1314
IPR027417	P-loop_NTPase	Gene3D	1353	1606
IPR036465	vWFA_dom_sf	Gene3D	5167	5329
IPR040848	AAA_lid_7	Pfam	1226	1323
IPR040848	AAA_lid_7	Pfam	1949	2043
IPR040848	AAA_lid_7	Pfam	490	605
IPR027417	P-loop_NTPase	SUPERFAMILY	652	980
IPR025662	Sigma_54_int_dom_ATP-bd_1	ProSitePatterns	670	683
IPR027417	P-loop_NTPase	SUPERFAMILY	1363	1665
IPR012099	Midasin	PIRSF	271	5380
IPR012099	Midasin	PIRSF	1	281
IPR027417	P-loop_NTPase	SUPERFAMILY	1051	1314
IPR036465	vWFA_dom_sf	SUPERFAMILY	5167	5372
IPR027417	P-loop_NTPase	SUPERFAMILY	1785	2012
IPR027417	P-loop_NTPase	SUPERFAMILY	334	554
IPR003593	AAA+_ATPase	SMART	666	950
IPR003593	AAA+_ATPase	SMART	1792	1944
IPR003593	AAA+_ATPase	SMART	2102	2366
IPR003593	AAA+_ATPase	SMART	1075	1220
IPR003593	AAA+_ATPase	SMART	1376	1612
IPR003593	AAA+_ATPase	SMART	338	483
IPR027417	P-loop_NTPase	Gene3D	653	925
IPR002035	VWF_A	ProSiteProfiles	5168	5369
IPR027417	P-loop_NTPase	Gene3D	2085	2183
IPR027417	P-loop_NTPase	SUPERFAMILY	2093	2363
IPR041190	Midasin_AAA_lid_5	Pfam	921	1022
IPR011704	ATPase_dyneun-rel_AAA	Pfam	1078	1214
IPR011704	ATPase_dyneun-rel_AAA	Pfam	2235	2353
IPR011704	ATPase_dyneun-rel_AAA	Pfam	669	716
IPR011704	ATPase_dyneun-rel_AAA	Pfam	341	467
IPR011704	ATPase_dyneun-rel_AAA	Pfam	822	908
IPR011704	ATPase_dyneun-rel_AAA	Pfam	1379	1444
IPR011704	ATPase_dyneun-rel_AAA	Pfam	1795	1934
IPR011704	ATPase_dyneun-rel_AAA	Pfam	1511	1602
IPR027417	P-loop_NTPase	Gene3D	1778	1951
IPR027417	P-loop_NTPase	Gene3D	326	495
IPR027417	P-loop_NTPase	Gene3D	2224	2368
IPR027417	P-loop_NTPase	Gene3D	1061	1232

No CAZYmes available for this sequence

External Links

No external refs found!

Seita.9G233700.1

Expression Profile

Co-expression Networks

Functional Annotation