Seita.9G315300.1

Description : translation initiation factor 3B1

Gene families : OG_01_0013826 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013826_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.9G315300.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_82

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003743	translation initiation factor activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	ISM	GOs from InterProScan
BP	GO:0006413	translational initiation	ISM	GOs from InterProScan
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0031369	translation initiation factor binding	ISM	GOs from InterProScan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	411	631
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	56	155
IPR034363	eIF3B_RRM	CDD	60	144
IPR013979	TIF_beta_prop-like	Pfam	407	607
IPR000504	RRM_dom	ProSiteProfiles	61	148
IPR000504	RRM_dom	Pfam	80	138
IPR035979	RBD_domain_sf	SUPERFAMILY	54	142
IPR011400	EIF3B	PANTHER	41	710
IPR011400	EIF3B	PIRSF	5	714
IPR000504	RRM_dom	SMART	62	143
IPR011400	EIF3B	Hamap	49	714
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	182	383
IPR034363	eIF3B_RRM	CDD	60	144
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	56	155
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	182	383
IPR013979	TIF_beta_prop-like	Pfam	407	607
IPR011400	EIF3B	Hamap	49	714
IPR035979	RBD_domain_sf	SUPERFAMILY	54	142
IPR000504	RRM_dom	SMART	62	143
IPR011400	EIF3B	PANTHER	5	709
IPR011400	EIF3B	PIRSF	5	714
IPR000504	RRM_dom	Pfam	80	138
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	411	631
IPR000504	RRM_dom	ProSiteProfiles	61	148

No CAZYmes available for this sequence

External Links

No external refs found!