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  5. Sevir.1G233500.1

Sevir.1G233500.1


Description : pentatricopeptide (PPR) repeat-containing protein


Gene families : OG_01_0011983 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011983_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.1G233500.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.1G233500.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_7
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_44


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 339 373
IPR002885 Pentatricopeptide_rpt TIGRFAM 343 375
IPR002885 Pentatricopeptide_rpt TIGRFAM 487 514
IPR002885 Pentatricopeptide_rpt TIGRFAM 625 654
IPR002885 Pentatricopeptide_rpt TIGRFAM 380 409
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 479 513
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 374 408
IPR011990 TPR-like_helical_dom_sf Gene3D 451 621
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 444 478
IPR002885 Pentatricopeptide_rpt Pfam 369 420
IPR011990 TPR-like_helical_dom_sf Gene3D 293 425
IPR002885 Pentatricopeptide_rpt Pfam 487 510
IPR002885 Pentatricopeptide_rpt Pfam 625 650
IPR002885 Pentatricopeptide_rpt Pfam 447 475
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 409 443

No CAZYmes available for this sequence

No external refs found!