Seita.9G381200.1

Description : P-loop containing nucleoside triphosphate hydrolases superfamily protein

Gene families : OG_01_0002360 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002360_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.9G381200.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_155

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005681	spliceosomal complex	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR045055	DNA2/NAM7-like	PANTHER	204	1552
IPR026300	CWF11_fam	PIRSF	40	1542
IPR048966	Aquarius_b-barrel	Pfam	548	718
IPR027417	P-loop_NTPase	Gene3D	1208	1399
IPR047187	SF1_C_Upf1	CDD	1210	1392
IPR048967	Aquarius_insert	Pfam	768	867
IPR027417	P-loop_NTPase	SUPERFAMILY	868	1373
IPR032174	Aquarius_N	Pfam	56	467
IPR041677	DNA2/NAM7_AAA_11	Pfam	885	1176
IPR041679	DNA2/NAM7-like_C	Pfam	1185	1376
IPR027417	P-loop_NTPase	Gene3D	815	1206
IPR027417	P-loop_NTPase	Gene3D	815	1206
IPR026300	CWF11_fam	PANTHER	175	1436
IPR041679	DNA2/NAM7-like_C	Pfam	1185	1375
IPR032174	Aquarius_N	Pfam	51	875
IPR027417	P-loop_NTPase	SUPERFAMILY	868	1373
IPR041679	DNA2/NAM7-like_C	CDD	1210	1392
IPR041677	DNA2/NAM7_AAA_11	Pfam	883	1176
IPR026300	CWF11_fam	PIRSF	40	1542
IPR045055	DNA2/NAM7-like	PANTHER	175	1436
IPR027417	P-loop_NTPase	Gene3D	1208	1399

No CAZYmes available for this sequence

External Links

No external refs found!

Seita.9G381200.1

Expression Profile

Co-expression Networks

Functional Annotation