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Description : polypyrimidine tract-binding protein 1
Gene families : OG_01_0012121 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012121_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.9G385400.1 | |
| Cluster | Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_240 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | ISM | GOs from InterProScan |
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 7 | 108 |
| IPR000504 | RRM_dom | Pfam | 24 | 73 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 125 | 216 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 252 | 344 |
| IPR034794 | PTBPH1/PTBPH2_RRM3 | CDD | 245 | 341 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 244 | 346 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 111 | 223 |
| IPR034792 | PTBPH1/PTBPH2_RRM1 | CDD | 18 | 98 |
| IPR021790 | PTBP1-like_RRM2 | Pfam | 244 | 323 |
| IPR000504 | RRM_dom | ProSiteProfiles | 20 | 98 |
| IPR000504 | RRM_dom | SMART | 249 | 319 |
| IPR000504 | RRM_dom | SMART | 21 | 94 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 6 | 108 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 7 | 108 |
| IPR034792 | PTBPH1/PTBPH2_RRM1 | CDD | 18 | 98 |
| IPR021790 | PTBP1-like_RRM2 | Pfam | 244 | 323 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 6 | 108 |
| IPR000504 | RRM_dom | Pfam | 24 | 73 |
| IPR034794 | PTBPH1/PTBPH2_RRM3 | CDD | 245 | 341 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 244 | 346 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 111 | 223 |
| IPR000504 | RRM_dom | ProSiteProfiles | 20 | 98 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 252 | 344 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 125 | 216 |
| IPR000504 | RRM_dom | SMART | 249 | 319 |
| IPR000504 | RRM_dom | SMART | 21 | 94 |
No CAZYmes available for this sequence
| No external refs found! |