Seita.9G403000.1

Description : homolog of nucleolar protein NOP56

Gene families : OG_01_0006746 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006746_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.9G403000.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_217

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	None	Extended
MF	GO:0030515	snoRNA binding	ISM	GOs from InterProScan
CC	GO:0030684	preribosome	None	Extended
CC	GO:0031428	box C/D RNP complex	ISM	GOs from InterProScan
CC	GO:0032040	small-subunit processome	ISM	GOs from InterProScan
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR012976	NOSIC	SMART	170	222
IPR036070	Nop_dom_sf	SUPERFAMILY	163	412
IPR012974	NOP58/56_N	Pfam	4	69
IPR002687	Nop_dom	ProSiteProfiles	295	413
IPR042239	Nop_C	Gene3D	300	411
IPR002687	Nop_dom	Pfam	177	409
IPR045056	Nop56/Nop58	PANTHER	4	545
IPR002687	Nop_dom	ProSiteProfiles	295	413
IPR002687	Nop_dom	Pfam	177	409
IPR042239	Nop_C	Gene3D	300	411
IPR012976	NOSIC	SMART	170	222
IPR045056	Nop56/Nop58	PANTHER	1	552
IPR012974	NOP58/56_N	Pfam	4	69
IPR036070	Nop_dom_sf	SUPERFAMILY	163	412

No CAZYmes available for this sequence

External Links

No external refs found!