1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.9G428300.1

Seita.9G428300.1


Description : high chlorophyll fluorescent 107


Gene families : OG_01_0005733 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005733_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.9G428300.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_202


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006396 RNA processing ISM GOs from InterProScan
BP GO:0006397 mRNA processing ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 1286 1468
IPR019734 TPR_repeat SMART 1322 1355
IPR019734 TPR_repeat SMART 1152 1185
IPR019734 TPR_repeat SMART 1186 1219
IPR019734 TPR_repeat SMART 1254 1287
IPR019734 TPR_repeat SMART 1117 1150
IPR019734 TPR_repeat SMART 1220 1253
IPR019734 TPR_repeat SMART 1393 1426
IPR019734 TPR_repeat SMART 1083 1116
IPR019734 TPR_repeat SMART 1356 1389
IPR019734 TPR_repeat ProSiteProfiles 1220 1253
IPR003107 HAT SMART 1370 1405
IPR003107 HAT SMART 1234 1266
IPR003107 HAT SMART 1336 1368
IPR003107 HAT SMART 1407 1439
IPR003107 HAT SMART 1131 1164
IPR003107 HAT SMART 1200 1232
IPR003107 HAT SMART 1302 1334
IPR003107 HAT SMART 1166 1198
IPR003107 HAT SMART 1268 1300
IPR019734 TPR_repeat Pfam 1119 1144
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 1285 1455
IPR011990 TPR-like_helical_dom_sf Gene3D 1069 1285
IPR007854 Fip1_dom Pfam 185 224
IPR044624 Mbb1-like PANTHER 964 1596
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 1090 1332
IPR011990 TPR-like_helical_dom_sf Gene3D 1286 1468
IPR003107 HAT SMART 1370 1405
IPR003107 HAT SMART 1234 1266
IPR003107 HAT SMART 1336 1368
IPR003107 HAT SMART 1407 1439
IPR003107 HAT SMART 1131 1164
IPR003107 HAT SMART 1302 1334
IPR003107 HAT SMART 1166 1198
IPR003107 HAT SMART 1200 1232
IPR003107 HAT SMART 1268 1300
IPR019734 TPR_repeat SMART 1322 1355
IPR019734 TPR_repeat SMART 1152 1185
IPR019734 TPR_repeat SMART 1186 1219
IPR019734 TPR_repeat SMART 1254 1287
IPR019734 TPR_repeat SMART 1117 1150
IPR019734 TPR_repeat SMART 1220 1253
IPR019734 TPR_repeat SMART 1393 1426
IPR019734 TPR_repeat SMART 1083 1116
IPR019734 TPR_repeat SMART 1356 1389
IPR044976 FIPS5-like PANTHER 18 967
IPR044976 FIPS5-like PANTHER 1120 1455
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 1285 1455
IPR007854 Fip1_dom Pfam 185 223
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 1090 1332
IPR019734 TPR_repeat Pfam 1119 1144
IPR011990 TPR-like_helical_dom_sf Gene3D 1069 1285
IPR019734 TPR_repeat ProSiteProfiles 1220 1253

No CAZYmes available for this sequence

No external refs found!