Seita.9G479700.1

Description : 5\'-3\' exonuclease family protein

Gene families : OG_01_0006805 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006805_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.9G479700.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_202

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
MF	GO:0003887	DNA-directed DNA polymerase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	None	Extended
BP	GO:0006261	DNA-templated DNA replication	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0034061	DNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR020045	DNA_polI_H3TH	CDD	289	362
IPR029060	PIN-like_dom_sf	SUPERFAMILY	88	285
IPR038969	FEN	PANTHER	94	421
IPR002421	5-3_exonuclease	SMART	92	381
IPR008918	HhH2	SMART	289	324
IPR020046	5-3_exonucl_a-hlix_arch_N	Pfam	176	285
IPR020045	DNA_polI_H3TH	Pfam	288	384
IPR036279	5-3_exonuclease_C_sf	SUPERFAMILY	287	378
IPR020045	DNA_polI_H3TH	CDD	289	362
IPR029060	PIN-like_dom_sf	SUPERFAMILY	88	285
IPR002298	DNA_polymerase_A	PANTHER	32	421
IPR020046	5-3_exonucl_a-hlix_arch_N	Pfam	94	285
IPR008918	HhH2	SMART	289	324
IPR020045	DNA_polI_H3TH	Pfam	288	384
IPR002421	5-3_exonuclease	SMART	92	381
IPR036279	5-3_exonuclease_C_sf	SUPERFAMILY	287	378

No CAZYmes available for this sequence

External Links

No external refs found!

Seita.9G479700.1

Expression Profile

Co-expression Networks

Functional Annotation