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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0005444 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005444_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.9G526500.1 | |
| Cluster | Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_115 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 978 | 1012 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 1188 | 1222 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 1191 | 1223 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 945 | 978 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 429 | 462 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 1120 | 1153 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 1153 | 1187 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 165 | 301 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 421 | 502 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 425 | 473 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 945 | 991 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 563 | 732 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 913 | 1082 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 1083 | 1246 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 943 | 977 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 461 | 495 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 302 | 420 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 1118 | 1152 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 1120 | 1146 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 1191 | 1219 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 426 | 460 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 461 | 495 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 426 | 460 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 1118 | 1152 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 1153 | 1187 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 1120 | 1153 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 1191 | 1223 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 945 | 978 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 429 | 462 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 425 | 473 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 945 | 990 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 302 | 420 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 943 | 977 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 1120 | 1146 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 1191 | 1219 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 165 | 301 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 421 | 502 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 1188 | 1222 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 563 | 732 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 913 | 1082 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 1083 | 1246 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 978 | 1012 |
No CAZYmes available for this sequence
| No external refs found! |